Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a18
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584...    62   6e-10
08_02_0193 - 14073103-14073246,14073332-14073481,14073571-140736...    42   7e-04
08_02_0541 + 18369702-18369800,18370934-18371055,18371370-183714...    31   0.96 
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349...    28   6.8  
08_02_0908 - 22499254-22499917,22500058-22500335,22501804-225018...    28   9.0  
06_01_1019 - 7971606-7972077,7972550-7972752                           28   9.0  
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039...    28   9.0  

>01_05_0176 -
           18957676-18958067,18958139-18958242,18958358-18958483,
           18959495-18959628,18959757-18959894,18960835-18960964,
           18961316-18961357,18964741-18965024
          Length = 449

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
 Frame = +3

Query: 453 SLVVLTSMAGYALAPAPF-QLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRV 629
           +LVV TS AGY L       +        GT +V+A+AN++NQ  E+  DA+M RT  R 
Sbjct: 110 ALVVATSGAGYVLGSGNMVDIAGLCCTCAGTMMVAASANTLNQVFEIKNDAKMKRTMRRP 169

Query: 630 LVKGLLEPVHAIGFAALTSSVGLGVLYFGVNPLTAAL 740
           L  G + P HA  +A      G  +L +  N L A L
Sbjct: 170 LPSGRISPAHAAMWATSVGVAGTALLAWKANGLAAGL 206


>08_02_0193 -
           14073103-14073246,14073332-14073481,14073571-14073640,
           14073900-14074021,14074260-14074395,14074492-14074967
          Length = 365

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +3

Query: 522 AFCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFAALTSSVGLG 701
           A    G  L+  A  ++N   +   D ++ RTK+R    G+L P   +GF  L   +GLG
Sbjct: 177 ALFGCGAVLLRGAGCTVNDLLDRDIDNKVERTKSRPFASGILTPTQGVGFLGLQLLLGLG 236

Query: 702 VL 707
           +L
Sbjct: 237 IL 238


>08_02_0541 +
           18369702-18369800,18370934-18371055,18371370-18371439,
           18371530-18371679,18371776-18371911,18372000-18372096,
           18372193-18372262
          Length = 247

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 606 MSRTKNRVLVKGLLEPVHAIGFAALTSSVGLGVL 707
           + RTK+R L  G+L P   +GF      +GL +L
Sbjct: 34  VERTKSRPLASGILTPTQGVGFLGFQLLLGLPIL 67


>02_01_0486 -
           3495792-3496034,3496862-3496934,3497128-3497422,
           3497585-3497759,3498349-3498795,3499994-3500053
          Length = 430

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +3

Query: 342 VKNKVTQDTRVWKETPSYDRKSNTGQYCL---MLSKSRLTSLVVLTSMAGYALA 494
           V+ +     R WKETP     S    +C    +L K      ++L S  G+ +A
Sbjct: 317 VQQRAAHPHRFWKETPVLVMVSTLAYFCFLEQLLLKMGAVLAILLASFTGFGIA 370


>08_02_0908 -
           22499254-22499917,22500058-22500335,22501804-22501851,
           22503474-22503575
          Length = 363

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 450 TSLVVLTSMAGYALAPAPFQLTTFAFCAVGTGLVSAAANS 569
           +S V   + AG + +PAP Q+  F   + G G V  + NS
Sbjct: 97  SSTVTAAAFAGGSSSPAPLQVLVFQQQSTGNGNVEISFNS 136


>06_01_1019 - 7971606-7972077,7972550-7972752
          Length = 224

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 225 SKPVLFKITNNTLFQHLARISTAQNWRSKVPLKTQTTATVKNKVTQDTRVWKETP--SYD 398
           ++ V  ++ +N   + + R++T    R  + L  Q    V  + T+DT +W+ +P  +Y 
Sbjct: 90  NRTVAQELQDNRWLRQMRRMNTTAQVREFIHLWHQIQQVVLQEGTEDTIMWRWSPNGTYS 149

Query: 399 RKS 407
            KS
Sbjct: 150 AKS 152


>02_05_1184 +
           34802749-34802892,34802981-34803220,34803636-34803950,
           34804030-34804209,34804312-34804504,34805062-34805324,
           34805461-34805590,34805719-34805786,34805951-34806199,
           34806284-34806357,34808052-34808143,34808603-34808685,
           34810337-34810408,34810558-34810683,34810996-34811037
          Length = 756

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 165 SYLKVIHCTLCLKHGYVGVYSKPVLFKITNNTLFQHLAR 281
           +Y   I   LC +  Y+ + S  VL   T+N  +QHL R
Sbjct: 245 TYFSQIFFYLCSQDCYIDICSPEVLSLFTDNFDYQHLRR 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,861,717
Number of Sequences: 37544
Number of extensions: 415070
Number of successful extensions: 867
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)