Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a18
         (741 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U82010-1|AAC51330.1|  443|Homo sapiens heme A: farnesyltransfera...   124   3e-28
U09466-1|AAA21148.1|  443|Homo sapiens heme A:farnesyltransferas...   124   3e-28
BT006985-1|AAP35631.1|  443|Homo sapiens COX10 homolog, cytochro...   124   3e-28
BC006394-1|AAH06394.1|  443|Homo sapiens COX10 homolog, cytochro...   124   3e-28
BC000060-1|AAH00060.1|  443|Homo sapiens COX10 homolog, cytochro...   124   3e-28
BT006832-1|AAP35478.1|  338|Homo sapiens transitional epithelia ...    33   0.81 
BC004468-1|AAH04468.1|  338|Homo sapiens UbiA prenyltransferase ...    33   0.81 
AL031291-2|CAI22838.1|  179|Homo sapiens transitional epithelia ...    33   0.81 
AL031291-1|CAI22837.1|  338|Homo sapiens transitional epithelia ...    33   0.81 
AK222808-1|BAD96528.1|  338|Homo sapiens transitional epithelia ...    33   0.81 
AF117064-1|AAD27581.1|  338|Homo sapiens transitional epithelia ...    33   0.81 

>U82010-1|AAC51330.1|  443|Homo sapiens heme A: farnesyltransferase
           protein.
          Length = 443

 Score =  124 bits (299), Expect = 3e-28
 Identities = 67/132 (50%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
 Frame = +3

Query: 351 KVTQDTRVWKETPS--YDRKSNTGQYCLMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFA 524
           K T++ + WKE     YD      Q    LSK +LT+LVV T+ AG+ALAP PF    F 
Sbjct: 135 KETKEEKRWKEMKLQVYDLPGILAQ----LSKIKLTALVVSTTAAGFALAPGPFDWPCFL 190

Query: 525 FCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFAALTSSVGLGV 704
             +VGTGL S AANSINQ+ EVPFD+ M+RTKNR LV+G + P+ A+ FA   +  G+ +
Sbjct: 191 LTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVAI 250

Query: 705 LYFGVNPLTAAL 740
           L  GVNPLT AL
Sbjct: 251 LTLGVNPLTGAL 262


>U09466-1|AAA21148.1|  443|Homo sapiens heme A:farnesyltransferase
           protein.
          Length = 443

 Score =  124 bits (299), Expect = 3e-28
 Identities = 67/132 (50%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
 Frame = +3

Query: 351 KVTQDTRVWKETPS--YDRKSNTGQYCLMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFA 524
           K T++ + WKE     YD      Q    LSK +LT+LVV T+ AG+ALAP PF    F 
Sbjct: 135 KETKEEKRWKEMKLQVYDLPGILAQ----LSKIKLTALVVSTTAAGFALAPGPFDWPCFL 190

Query: 525 FCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFAALTSSVGLGV 704
             +VGTGL S AANSINQ+ EVPFD+ M+RTKNR LV+G + P+ A+ FA   +  G+ +
Sbjct: 191 LTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVAI 250

Query: 705 LYFGVNPLTAAL 740
           L  GVNPLT AL
Sbjct: 251 LTLGVNPLTGAL 262


>BT006985-1|AAP35631.1|  443|Homo sapiens COX10 homolog, cytochrome
           c oxidase assembly protein, heme A: farnesyltransfera
           protein.
          Length = 443

 Score =  124 bits (299), Expect = 3e-28
 Identities = 67/132 (50%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
 Frame = +3

Query: 351 KVTQDTRVWKETPS--YDRKSNTGQYCLMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFA 524
           K T++ + WKE     YD      Q    LSK +LT+LVV T+ AG+ALAP PF    F 
Sbjct: 135 KETKEEKRWKEMKLQVYDLPGILAQ----LSKIKLTALVVSTTAAGFALAPGPFDWPCFL 190

Query: 525 FCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFAALTSSVGLGV 704
             +VGTGL S AANSINQ+ EVPFD+ M+RTKNR LV+G + P+ A+ FA   +  G+ +
Sbjct: 191 LTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVAI 250

Query: 705 LYFGVNPLTAAL 740
           L  GVNPLT AL
Sbjct: 251 LTLGVNPLTGAL 262


>BC006394-1|AAH06394.1|  443|Homo sapiens COX10 homolog, cytochrome
           c oxidase assembly protein, heme A: farnesyltransfera
           protein.
          Length = 443

 Score =  124 bits (299), Expect = 3e-28
 Identities = 67/132 (50%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
 Frame = +3

Query: 351 KVTQDTRVWKETPS--YDRKSNTGQYCLMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFA 524
           K T++ + WKE     YD      Q    LSK +LT+LVV T+ AG+ALAP PF    F 
Sbjct: 135 KETKEEKRWKEMKLQVYDLPGILAQ----LSKIKLTALVVSTTAAGFALAPGPFDWPCFL 190

Query: 525 FCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFAALTSSVGLGV 704
             +VGTGL S AANSINQ+ EVPFD+ M+RTKNR LV+G + P+ A+ FA   +  G+ +
Sbjct: 191 LTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVAI 250

Query: 705 LYFGVNPLTAAL 740
           L  GVNPLT AL
Sbjct: 251 LTLGVNPLTGAL 262


>BC000060-1|AAH00060.1|  443|Homo sapiens COX10 homolog, cytochrome
           c oxidase assembly protein, heme A: farnesyltransfera
           protein.
          Length = 443

 Score =  124 bits (299), Expect = 3e-28
 Identities = 67/132 (50%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
 Frame = +3

Query: 351 KVTQDTRVWKETPS--YDRKSNTGQYCLMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFA 524
           K T++ + WKE     YD      Q    LSK +LT+LVV T+ AG+ALAP PF    F 
Sbjct: 135 KETKEEKRWKEMKLQVYDLPGILAQ----LSKIKLTALVVSTTAAGFALAPGPFDWPCFL 190

Query: 525 FCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFAALTSSVGLGV 704
             +VGTGL S AANSINQ+ EVPFD+ M+RTKNR LV+G + P+ A+ FA   +  G+ +
Sbjct: 191 LTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVAI 250

Query: 705 LYFGVNPLTAAL 740
           L  GVNPLT AL
Sbjct: 251 LTLGVNPLTGAL 262


>BT006832-1|AAP35478.1|  338|Homo sapiens transitional epithelia
           response protein protein.
          Length = 338

 Score = 33.5 bits (73), Expect = 0.81
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 528 CAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFAALTSSVG 695
           CAV    V  A N +N Y++        ++ +R LV  +LEP   + F     ++G
Sbjct: 87  CAVAVLAVHGAGNLVNTYYDFSKGIDHKKSDDRTLVDRILEPQDVVRFGVFLYTLG 142


>BC004468-1|AAH04468.1|  338|Homo sapiens UbiA prenyltransferase
           domain containing 1 protein.
          Length = 338

 Score = 33.5 bits (73), Expect = 0.81
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 528 CAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFAALTSSVG 695
           CAV    V  A N +N Y++        ++ +R LV  +LEP   + F     ++G
Sbjct: 87  CAVAVLAVHGAGNLVNTYYDFSKGIDHKKSDDRTLVDRILEPQDVVRFGVFLYTLG 142


>AL031291-2|CAI22838.1|  179|Homo sapiens transitional epithelia
           response protein (TERE1) protein.
          Length = 179

 Score = 33.5 bits (73), Expect = 0.81
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 528 CAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFAALTSSVG 695
           CAV    V  A N +N Y++        ++ +R LV  +LEP   + F     ++G
Sbjct: 87  CAVAVLAVHGAGNLVNTYYDFSKGIDHKKSDDRTLVDRILEPQDVVRFGVFLYTLG 142


>AL031291-1|CAI22837.1|  338|Homo sapiens transitional epithelia
           response protein (TERE1) protein.
          Length = 338

 Score = 33.5 bits (73), Expect = 0.81
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 528 CAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFAALTSSVG 695
           CAV    V  A N +N Y++        ++ +R LV  +LEP   + F     ++G
Sbjct: 87  CAVAVLAVHGAGNLVNTYYDFSKGIDHKKSDDRTLVDRILEPQDVVRFGVFLYTLG 142


>AK222808-1|BAD96528.1|  338|Homo sapiens transitional epithelia
           response protein variant protein.
          Length = 338

 Score = 33.5 bits (73), Expect = 0.81
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 528 CAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFAALTSSVG 695
           CAV    V  A N +N Y++        ++ +R LV  +LEP   + F     ++G
Sbjct: 87  CAVAVLAVHGAGNLVNTYYDFSKGIDHKKSDDRTLVDRILEPQDVVRFGVFLYTLG 142


>AF117064-1|AAD27581.1|  338|Homo sapiens transitional epithelia
           response protein protein.
          Length = 338

 Score = 33.5 bits (73), Expect = 0.81
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 528 CAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFAALTSSVG 695
           CAV    V  A N +N Y++        ++ +R LV  +LEP   + F     ++G
Sbjct: 87  CAVAVLAVHGAGNLVNTYYDFSKGIDHKKSDDRTLVDRILEPQDVVRFGVFLYTLG 142


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,765,126
Number of Sequences: 237096
Number of extensions: 2367346
Number of successful extensions: 8631
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8631
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)