Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a18
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical...    93   1e-19
AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical...    93   1e-19
U13876-11|AAN63395.1|  201|Caenorhabditis elegans Coenzyme q (ub...    33   0.21 
U13876-10|AAN63394.1|  216|Caenorhabditis elegans Coenzyme q (ub...    33   0.21 
U13876-9|AAW88395.1|  356|Caenorhabditis elegans Coenzyme q (ubi...    33   0.21 
U13876-8|AAN63396.1|  370|Caenorhabditis elegans Coenzyme q (ubi...    33   0.21 
U13876-7|AAW88396.1|  427|Caenorhabditis elegans Coenzyme q (ubi...    33   0.21 
U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z79602-3|CAB01890.1|  474|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 48/105 (45%), Positives = 63/105 (60%)
 Frame = +3

Query: 426 LMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQ 605
           L L KS+L+  V  T+  G  +AP P    +     VGT L+S+AAN+ NQ  E P+DAQ
Sbjct: 93  LALCKSKLSLFVASTATCGVLMAPVPVAADSLIAATVGTFLLSSAANACNQLLEAPYDAQ 152

Query: 606 MSRTKNRVLVKGLLEPVHAIGFAALTSSVGLGVLYFGVNPLTAAL 740
           M RT+ RVLV     P+HA  FA +T   G+G+L +  NPL AAL
Sbjct: 153 MRRTQTRVLVVHRFSPLHAFTFAGVTGLTGIGLLAYYANPLAAAL 197


>AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 48/105 (45%), Positives = 63/105 (60%)
 Frame = +3

Query: 426 LMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQ 605
           L L KS+L+  V  T+  G  +AP P    +     VGT L+S+AAN+ NQ  E P+DAQ
Sbjct: 93  LALCKSKLSLFVASTATCGVLMAPVPVAADSLIAATVGTFLLSSAANACNQLLEAPYDAQ 152

Query: 606 MSRTKNRVLVKGLLEPVHAIGFAALTSSVGLGVLYFGVNPLTAAL 740
           M RT+ RVLV     P+HA  FA +T   G+G+L +  NPL AAL
Sbjct: 153 MRRTQTRVLVVHRFSPLHAFTFAGVTGLTGIGLLAYYANPLAAAL 197


>U13876-11|AAN63395.1|  201|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform d protein.
          Length = 201

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/71 (33%), Positives = 33/71 (46%)
 Frame = +3

Query: 495 PAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFA 674
           P+ + L+ F     G  L+ +A   IN   +  FD ++ RTK R L  G L    AIG  
Sbjct: 98  PSIYMLSLFG---AGAFLMRSAGCVINDLWDKDFDKKVERTKLRPLACGSLTEKQAIGLL 154

Query: 675 ALTSSVGLGVL 707
           A   S  L +L
Sbjct: 155 AGLLSSSLAIL 165


>U13876-10|AAN63394.1|  216|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform c protein.
          Length = 216

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/71 (33%), Positives = 33/71 (46%)
 Frame = +3

Query: 495 PAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFA 674
           P+ + L+ F     G  L+ +A   IN   +  FD ++ RTK R L  G L    AIG  
Sbjct: 98  PSIYMLSLFG---AGAFLMRSAGCVINDLWDKDFDKKVERTKLRPLACGSLTEKQAIGLL 154

Query: 675 ALTSSVGLGVL 707
           A   S  L +L
Sbjct: 155 AGLLSSSLAIL 165


>U13876-9|AAW88395.1|  356|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform a protein.
          Length = 356

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/71 (33%), Positives = 33/71 (46%)
 Frame = +3

Query: 495 PAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFA 674
           P+ + L+ F     G  L+ +A   IN   +  FD ++ RTK R L  G L    AIG  
Sbjct: 98  PSIYMLSLFG---AGAFLMRSAGCVINDLWDKDFDKKVERTKLRPLACGSLTEKQAIGLL 154

Query: 675 ALTSSVGLGVL 707
           A   S  L +L
Sbjct: 155 AGLLSSSLAIL 165


>U13876-8|AAN63396.1|  370|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform e protein.
          Length = 370

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/71 (33%), Positives = 33/71 (46%)
 Frame = +3

Query: 495 PAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFA 674
           P+ + L+ F     G  L+ +A   IN   +  FD ++ RTK R L  G L    AIG  
Sbjct: 98  PSIYMLSLFG---AGAFLMRSAGCVINDLWDKDFDKKVERTKLRPLACGSLTEKQAIGLL 154

Query: 675 ALTSSVGLGVL 707
           A   S  L +L
Sbjct: 155 AGLLSSSLAIL 165


>U13876-7|AAW88396.1|  427|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform b protein.
          Length = 427

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/71 (33%), Positives = 33/71 (46%)
 Frame = +3

Query: 495 PAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHAIGFA 674
           P+ + L+ F     G  L+ +A   IN   +  FD ++ RTK R L  G L    AIG  
Sbjct: 98  PSIYMLSLFG---AGAFLMRSAGCVINDLWDKDFDKKVERTKLRPLACGSLTEKQAIGLL 154

Query: 675 ALTSSVGLGVL 707
           A   S  L +L
Sbjct: 155 AGLLSSSLAIL 165


>U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical
           protein C03G6.5 protein.
          Length = 224

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = -3

Query: 490 SAYPAIDVNTTNDVNRD--LDSIKQYCPVLLFLSYDGVS 380
           S Y  ++  T +D  +D  ++SIKQYC  ++++S DG S
Sbjct: 107 SCYSNLNCTTKSDDEKDKYVESIKQYCDAVVYVS-DGFS 144


>Z79602-3|CAB01890.1|  474|Caenorhabditis elegans Hypothetical
           protein K09E9.3 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 141 ARRINLIMSYLKVIHCTLCLKHGYVGVY 224
           A+RI L  SYL +IH   CL   Y  +Y
Sbjct: 443 AKRIALFSSYLFIIHPVFCLNITYFHLY 470


>U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical
           protein M01H9.2 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
 Frame = +2

Query: 446 VNIISCVDVYGRIRTSTCPVSTYYLCILRCGYWSS---ISCSKL--YKSVS*STI*CPNV 610
           +N++ C D    I    C   T   C+ R GY+     ++C     Y+ +    I C  V
Sbjct: 278 INLLGCKDKDEVI----CKHVTADTCLSRPGYYLKLCPVTCKNCSGYQCIDSIKIDCAEV 333

Query: 611 EDKEQGACQRFIRARPCNRFC 673
             K QGAC+  + +  C R C
Sbjct: 334 --KAQGACKLSVASEYCPRTC 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,420,644
Number of Sequences: 27780
Number of extensions: 380268
Number of successful extensions: 860
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)