Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a18
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    26   0.43 
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    24   1.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    24   1.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.0  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   7.0  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 733 AVKGLTPKYKTPRPTLLVNAAKPIAWTGSNKPL 635
           AV G T      RPT L   AKP A  G+N+P+
Sbjct: 15  AVFGNTNLDPPTRPTRLRREAKPEAEPGNNRPV 47


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 733 AVKGLTPKYKTPRPTLLVNAAKPIAWTGSNKPL 635
           AV G T      RPT L   A+P A  G+N+P+
Sbjct: 16  AVFGNTNLDPPTRPTRLRREAEPEAEPGNNRPV 48


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 733 AVKGLTPKYKTPRPTLLVNAAKPIAWTGSNKPL 635
           AV G T      RP  L   AKP A  G+N+P+
Sbjct: 16  AVFGNTNLDPPTRPARLRREAKPEAEPGNNRPI 48


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 677 CCKTYCMD 654
           CCK YCMD
Sbjct: 458 CCKGYCMD 465


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/28 (28%), Positives = 11/28 (39%)
 Frame = -2

Query: 374 YSGVLGDFILYRCSCLSFKWNFTSPVLC 291
           Y G+      Y C      W  T+P +C
Sbjct: 476 YDGIRDMIGYYPCCWWKICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/28 (28%), Positives = 11/28 (39%)
 Frame = -2

Query: 374 YSGVLGDFILYRCSCLSFKWNFTSPVLC 291
           Y G+      Y C      W  T+P +C
Sbjct: 529 YDGIRDMIGYYPCCWWKICWTITTPAIC 556


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 624  CSLSSTFGHQMVLH 583
            C + +TFGH  V H
Sbjct: 1346 CYVENTFGHDTVTH 1359


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = -2

Query: 722 VDPKIQNAKAYAACQCCKTYCMD 654
           +DP  Q    Y  CQ    Y +D
Sbjct: 87  IDPATQKDAGYYECQADNQYAVD 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,472
Number of Sequences: 438
Number of extensions: 4786
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)