Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a16
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0557 + 26227263-26227707,26228179-26228342,26228432-262285...    30   0.56 
02_05_0140 - 26218828-26219759,26219885-26220002,26220089-262202...    30   0.56 
07_03_0546 - 19325526-19326054,19327109-19327631,19327898-193281...    28   2.2  
04_03_0853 - 20292734-20292968,20293056-20293144,20293239-202941...    28   3.0  
06_01_0664 + 4850445-4850879,4853155-4854186                           27   3.9  
05_03_0478 - 14526180-14526578                                         27   5.2  
02_05_0048 + 25418380-25418954,25419821-25419943,25420334-254203...    27   5.2  
04_04_0671 - 27157692-27158620,27158711-27158828,27158967-271591...    26   9.1  

>04_04_0557 +
           26227263-26227707,26228179-26228342,26228432-26228529,
           26228620-26228754,26228842-26229031,26229117-26230223
          Length = 712

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 158 WESYWKLCSKHKGSWYAEIQKE 93
           W   W L SK KGSWY E   E
Sbjct: 313 WGIMWPLISKKKGSWYPETLPE 334


>02_05_0140 -
           26218828-26219759,26219885-26220002,26220089-26220278,
           26220380-26220514,26220617-26220714,26221697-26221866,
           26222586-26222961
          Length = 672

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 158 WESYWKLCSKHKGSWY 111
           W   W L SKHKG WY
Sbjct: 292 WGIMWPLISKHKGDWY 307


>07_03_0546 -
           19325526-19326054,19327109-19327631,19327898-19328152,
           19328283-19328472,19328473-19328525,19329295-19329555,
           19329670-19329720,19329873-19330121,19330225-19330453,
           19332245-19332559
          Length = 884

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 86  LEVLFGFLHTNCLYALSIISNSFPIICDFFVLG 184
           L V+FG + T+ LYA  ++ N +PI     VLG
Sbjct: 120 LGVVFGDVGTSPLYAFDVMFNKYPITSKEDVLG 152


>04_03_0853 -
           20292734-20292968,20293056-20293144,20293239-20294111,
           20294203-20294364
          Length = 452

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -3

Query: 175 KEVANYGKAIGNYAQSIKAVGMQKSKKNFQVSHGMIN 65
           K V  YGK  GNY  S  A G   S + F  S G I+
Sbjct: 77  KSVVEYGKVSGNYTAS--ATGEHTSYRYFLYSSGKIH 111


>06_01_0664 + 4850445-4850879,4853155-4854186
          Length = 488

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 167 RKLWESYWKLCSKHKGSWYAEIQKELPSKPW 75
           R LW+  W   SK K  W A + +++    W
Sbjct: 191 RALWKHIWSFLSKKKHIWSANVPQKVRIFAW 221


>05_03_0478 - 14526180-14526578
          Length = 132

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -2

Query: 176 QRSRKLWESYWKLCSKHKGSWYAEIQKELPSKPWYDKYKGANER 45
           QR  + W++    C    GSW    +++      +D Y+GA  R
Sbjct: 35  QRGDEGWQTIGSGCVSSGGSWARRQRRDEEDHRQHDGYRGARRR 78


>02_05_0048 +
           25418380-25418954,25419821-25419943,25420334-25420370,
           25420458-25420555,25420654-25420788,25421021-25421210,
           25421329-25422438
          Length = 755

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 158 WESYWKLCSKHKGSWY 111
           W   W L +K KGSWY
Sbjct: 355 WGVMWPLIAKKKGSWY 370


>04_04_0671 -
           27157692-27158620,27158711-27158828,27158967-27159156,
           27159281-27159415,27159537-27159634,27160034-27160206,
           27160299-27160772,27161464-27161518
          Length = 723

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 158 WESYWKLCSKHKGSWYA 108
           W   W L  K KG+WY+
Sbjct: 344 WGIMWPLIGKQKGNWYS 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,248,506
Number of Sequences: 37544
Number of extensions: 168586
Number of successful extensions: 394
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)