Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3a16
(387 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 42 3e-04
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 39 0.002
Y08160-1|CAA69352.1| 1745|Drosophila melanogaster dilute class u... 31 0.52
BT010003-1|AAQ22472.1| 1401|Drosophila melanogaster RE30195p pro... 31 0.52
AF003826-1|AAC99496.1| 1792|Drosophila melanogaster myosin V pro... 31 0.52
AE013599-435|AAM68903.1| 1196|Drosophila melanogaster CG2146-PB,... 31 0.52
AE013599-434|AAF59241.2| 1792|Drosophila melanogaster CG2146-PA,... 31 0.52
AE013599-433|AAM68902.1| 1800|Drosophila melanogaster CG2146-PC,... 31 0.52
AF032921-1|AAC47810.1| 333|Drosophila melanogaster ribonuclease... 29 1.6
AY129451-1|AAM76193.1| 787|Drosophila melanogaster RE01517p pro... 28 3.7
AE014298-1891|AAF48260.1| 787|Drosophila melanogaster CG10617-P... 28 3.7
AY089374-1|AAL90112.1| 333|Drosophila melanogaster AT19436p pro... 28 4.9
AE013599-539|AAF59170.1| 333|Drosophila melanogaster CG8729-PA,... 28 4.9
AE013599-538|AAS64899.1| 314|Drosophila melanogaster CG8729-PB,... 28 4.9
AF132149-1|AAD34737.1| 699|Drosophila melanogaster unknown prot... 27 6.4
AE013599-752|AAF59014.1| 699|Drosophila melanogaster CG8230-PA ... 27 6.4
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 41.9 bits (94), Expect = 3e-04
Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 1/122 (0%)
Frame = -2
Query: 368 NNYLLYKIREALTSLDTPVTFKWVPSHRGIKGNEIVDGIVNSNYDEDHTNSCRVPFTDFL 189
N++ +IR +T + W+P H GIKGNE+ D S + + TD
Sbjct: 1025 NSFYPSRIRSLITQHAPKIKIMWIPGHSGIKGNELADQAAKSASSMPLILTPNINTTDIK 1084
Query: 188 FDLKQRSRKLWESYWKLCSKHKGSWYAEIQKELPSKPWYDKYKGANERKFITI-INRLRF 12
LK + + CS WY I Y K N + I I RLR
Sbjct: 1085 KHLKADLATKQKEHIINCS----PWYQSINTNTSHPCDYLKQSHPNWTRLDQIKIIRLRL 1140
Query: 11 GH 6
GH
Sbjct: 1141 GH 1142
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -2
Query: 368 NNYLLYKIREALTSLDTPVTFKWVPSHRGIKGNEIVD 258
N+ ++R L+S +T WVPSH+GI GNE+ D
Sbjct: 1040 NDPTTQEVRHILSSHPKKITLLWVPSHQGIHGNELAD 1076
>Y08160-1|CAA69352.1| 1745|Drosophila melanogaster dilute class
unconventional myosin protein.
Length = 1745
Score = 31.1 bits (67), Expect = 0.52
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 254 IVNSNYDEDHTNSCRVPFTDFLFDLKQRSRKLWESYWKLCSKHK 123
+++ NY + + S V L + KQ+ + L E Y KL S+HK
Sbjct: 1089 LLSKNYSYNDSTSLVVKLRSILEEEKQKHKVLQEQYIKLSSRHK 1132
>BT010003-1|AAQ22472.1| 1401|Drosophila melanogaster RE30195p protein.
Length = 1401
Score = 31.1 bits (67), Expect = 0.52
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 254 IVNSNYDEDHTNSCRVPFTDFLFDLKQRSRKLWESYWKLCSKHK 123
+++ NY + + S V L + KQ+ + L E Y KL S+HK
Sbjct: 1144 LLSKNYSYNDSTSLVVKLRSILEEEKQKHKVLQEQYIKLSSRHK 1187
>AF003826-1|AAC99496.1| 1792|Drosophila melanogaster myosin V protein.
Length = 1792
Score = 31.1 bits (67), Expect = 0.52
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 254 IVNSNYDEDHTNSCRVPFTDFLFDLKQRSRKLWESYWKLCSKHK 123
+++ NY + + S V L + KQ+ + L E Y KL S+HK
Sbjct: 1136 LLSKNYSYNDSTSLVVKLRSILEEEKQKHKVLQEQYIKLSSRHK 1179
>AE013599-435|AAM68903.1| 1196|Drosophila melanogaster CG2146-PB,
isoform B protein.
Length = 1196
Score = 31.1 bits (67), Expect = 0.52
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 254 IVNSNYDEDHTNSCRVPFTDFLFDLKQRSRKLWESYWKLCSKHK 123
+++ NY + + S V L + KQ+ + L E Y KL S+HK
Sbjct: 1136 LLSKNYSYNDSTSLVVKLRSILEEEKQKHKVLQEQYIKLSSRHK 1179
>AE013599-434|AAF59241.2| 1792|Drosophila melanogaster CG2146-PA,
isoform A protein.
Length = 1792
Score = 31.1 bits (67), Expect = 0.52
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 254 IVNSNYDEDHTNSCRVPFTDFLFDLKQRSRKLWESYWKLCSKHK 123
+++ NY + + S V L + KQ+ + L E Y KL S+HK
Sbjct: 1136 LLSKNYSYNDSTSLVVKLRSILEEEKQKHKVLQEQYIKLSSRHK 1179
>AE013599-433|AAM68902.1| 1800|Drosophila melanogaster CG2146-PC,
isoform C protein.
Length = 1800
Score = 31.1 bits (67), Expect = 0.52
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 254 IVNSNYDEDHTNSCRVPFTDFLFDLKQRSRKLWESYWKLCSKHK 123
+++ NY + + S V L + KQ+ + L E Y KL S+HK
Sbjct: 1144 LLSKNYSYNDSTSLVVKLRSILEEEKQKHKVLQEQYIKLSSRHK 1187
>AF032921-1|AAC47810.1| 333|Drosophila melanogaster ribonuclease H1
protein.
Length = 333
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = -2
Query: 323 DTPVTFKW--VPSHRGIKGNEIVD 258
D +T KW V +H+GI+GNE+ D
Sbjct: 295 DNNITVKWNYVEAHKGIEGNEMAD 318
>AY129451-1|AAM76193.1| 787|Drosophila melanogaster RE01517p
protein.
Length = 787
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 338 ALTSLDTPVTFKWVPSHRGIKGNEIVDGIVNSNYDE 231
++ SLDT V VP H G ++V G + +Y+E
Sbjct: 518 SVESLDTFVRIYLVPDHPGAMQTKVVKGTLTPSYNE 553
>AE014298-1891|AAF48260.1| 787|Drosophila melanogaster CG10617-PA
protein.
Length = 787
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 338 ALTSLDTPVTFKWVPSHRGIKGNEIVDGIVNSNYDE 231
++ SLDT V VP H G ++V G + +Y+E
Sbjct: 518 SVESLDTFVRIYLVPDHPGAMQTKVVKGTLTPSYNE 553
>AY089374-1|AAL90112.1| 333|Drosophila melanogaster AT19436p
protein.
Length = 333
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Frame = -2
Query: 314 VTFKW--VPSHRGIKGNEIVD 258
+T KW V +H+GI+GNE+ D
Sbjct: 298 ITVKWNYVEAHKGIEGNEMAD 318
>AE013599-539|AAF59170.1| 333|Drosophila melanogaster CG8729-PA,
isoform A protein.
Length = 333
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Frame = -2
Query: 314 VTFKW--VPSHRGIKGNEIVD 258
+T KW V +H+GI+GNE+ D
Sbjct: 298 ITVKWNYVEAHKGIEGNEMAD 318
>AE013599-538|AAS64899.1| 314|Drosophila melanogaster CG8729-PB,
isoform B protein.
Length = 314
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Frame = -2
Query: 314 VTFKW--VPSHRGIKGNEIVD 258
+T KW V +H+GI+GNE+ D
Sbjct: 279 ITVKWNYVEAHKGIEGNEMAD 299
>AF132149-1|AAD34737.1| 699|Drosophila melanogaster unknown
protein.
Length = 699
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 56 LLYIYHTMAY--LEVLFGFLHTNCLYALSIISNSF 154
+L + T+ Y L++ +LHTNCL AL+ +S F
Sbjct: 466 ILIVIRTIQYNMLKMRDKYLHTNCLAALANMSGHF 500
>AE013599-752|AAF59014.1| 699|Drosophila melanogaster CG8230-PA
protein.
Length = 699
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 56 LLYIYHTMAY--LEVLFGFLHTNCLYALSIISNSF 154
+L + T+ Y L++ +LHTNCL AL+ +S F
Sbjct: 466 ILIVIRTIQYNMLKMRDKYLHTNCLAALANMSGHF 500
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,859,564
Number of Sequences: 53049
Number of extensions: 299946
Number of successful extensions: 554
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1066083345
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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