Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3a16
(387 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64845-5|AAC48027.1| 581|Caenorhabditis elegans Hypothetical pr... 28 2.6
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit... 28 2.6
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 28 2.6
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 4.6
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 4.6
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 4.6
Z70682-1|CAA94584.1| 363|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z69902-1|CAA93767.1| 689|Caenorhabditis elegans Hypothetical pr... 27 6.1
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 27 6.1
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 27 6.1
Z36948-3|CAA85412.1| 421|Caenorhabditis elegans Hypothetical pr... 26 8.1
AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical... 26 8.1
>U64845-5|AAC48027.1| 581|Caenorhabditis elegans Hypothetical
protein F45F2.6 protein.
Length = 581
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 59 LYIYHTMAYLEVLFGFLHTNCLYALSIISNSFPII 163
L+IYHT +E FGF H ++++ S P++
Sbjct: 508 LFIYHTFETIESNFGFPHKMSSVYSALLNISSPLV 542
>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw
(imitation swi) homologprotein 1 protein.
Length = 1009
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 211 EFLLRTFFLT*NKEVANYGKAIGNYAQSIKAVGMQKSKKNFQVSHGMINIKEPM 50
+F R F +KE+ +Y K IG A+ K V ++++K +IN P+
Sbjct: 730 QFYPRRLFELLDKEIYHYRKTIGYVAERPKDVPPKEAEKRQAEEQKLINNARPL 783
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 56 LLYI--YHTMAYLEVLFGFLHTNCLYALSIISNSFPIICDFF 175
++YI H L + GFLH L L +SNS IC+ F
Sbjct: 922 MIYICTQHIADALNQIVGFLHLKSLQNLYTMSNSSDEICNLF 963
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.1 bits (57), Expect = 4.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 323 DTPVTFKWVPSHRG 282
DT TFKW+P H G
Sbjct: 8941 DTSATFKWLPPHTG 8954
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 4.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 323 DTPVTFKWVPSHRG 282
DT TFKW+P H G
Sbjct: 8961 DTSATFKWLPPHTG 8974
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 4.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 323 DTPVTFKWVPSHRG 282
DT TFKW+P H G
Sbjct: 8961 DTSATFKWLPPHTG 8974
>Z70682-1|CAA94584.1| 363|Caenorhabditis elegans Hypothetical
protein F08G5.2 protein.
Length = 363
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 197 DFLFDLKQRSRKLWESYWKLCSKHKGSWYAEIQKEL 90
+FLFD Q+ KL ESY+K S S A+ ++
Sbjct: 303 NFLFDRYQKKDKLLESYYKTGSFSSESKEAQFPSDM 338
>Z69902-1|CAA93767.1| 689|Caenorhabditis elegans Hypothetical
protein C47D12.2 protein.
Length = 689
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Frame = +2
Query: 104 FLHTNCLYALSIIS----NSFPIIC 166
+LHTNCL AL+ +S N PI+C
Sbjct: 481 YLHTNCLAALANMSAFFKNLAPIVC 505
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 199 RTFFLT*NKEVANYGKAIGNYAQSIKAVGMQKSKKNFQVSHGMINIKE 56
R F + +E A G GN Q+ + +GM K ++ S M I++
Sbjct: 156 RNFVIQKKEESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMAGIRK 203
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 199 RTFFLT*NKEVANYGKAIGNYAQSIKAVGMQKSKKNFQVSHGMINIKE 56
R F + +E A G GN Q+ + +GM K ++ S M I++
Sbjct: 156 RNFVIQKKEESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMAGIRK 203
>Z36948-3|CAA85412.1| 421|Caenorhabditis elegans Hypothetical
protein D2089.5 protein.
Length = 421
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 188 FDLKQRSRKLWESYWKLCSKHKGSWYAEIQKELPSK 81
FD++Q +RKLW C K + W + + E PS+
Sbjct: 71 FDVEQNARKLWIDEDANCLKIE--WESGVLSEFPSE 104
>AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical
protein Y87G2A.18 protein.
Length = 118
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +3
Query: 48 FIGSFIFIIPW--LTWKFFLD 104
F+G F+FIIPW FFLD
Sbjct: 76 FLGIFLFIIPWCFCCVPFFLD 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,479,023
Number of Sequences: 27780
Number of extensions: 164645
Number of successful extensions: 454
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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