Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a16
         (387 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   2.8  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   2.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   2.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   2.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   2.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   8.6  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -2

Query: 305 KWVPSHRGIKGNEIVDGIVNSNYDEDHTNSCR 210
           K + ++   K N   +   N+NY+ ++ N+C+
Sbjct: 321 KTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCK 352


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 269 EIVDGIVNSNYDEDHTNSC 213
           E+VDG+    + +DH   C
Sbjct: 49  ELVDGMRRGEFPDDHDLQC 67


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 169 VANYGKAIGNYAQSIKAVGMQKSKKNFQVSHGMI 68
           V  Y  A+  Y Q +KA+        F  SH ++
Sbjct: 447 VEGYPHAVPKYIQRLKAIRATLKASPFFASHEVV 480


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 169 VANYGKAIGNYAQSIKAVGMQKSKKNFQVSHGMI 68
           V  Y  A+  Y Q +KA+        F  SH ++
Sbjct: 362 VEGYPHAVPKYIQRLKAIRATLKASPFFASHEVV 395


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 169 VANYGKAIGNYAQSIKAVGMQKSKKNFQVSHGMI 68
           V  Y  A+  Y Q +KA+        F  SH ++
Sbjct: 681 VEGYPHAVPKYIQRLKAIRATLKASPFFASHEVV 714


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 301 HLNVTGVSKDVNASL 345
           HL + GVSK +   L
Sbjct: 34  HLQILGVSKQIETGL 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,915
Number of Sequences: 438
Number of extensions: 1993
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)