Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a13
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   4.1  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   7.2  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    25   9.5  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 218 VVSHNCRLTPLEEGPCDTETHKVILETIYLEFHLLNH 328
           +V H      ++  P D++T  ++LE +    HLL+H
Sbjct: 73  IVEHYSLKDKVQTKPFDSDTLSILLEILSFSAHLLSH 109


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 115 CTISYRCQGTLRSRHRYIRKRLPSHQTWD 201
           C ++Y  +G L  + R  +K  PSH +WD
Sbjct: 206 CDVTYE-EGPLTKKLRGPKKYKPSHSSWD 233


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +2

Query: 2   HFLFGRP--LVYNRYKRILSKHTRLQLS*RLGVYMRWSPHAQFPIDVKAPLEAGIDTSEK 175
           HF F +P   ++  +  I  ++  L+   +      W+ +  FP   K P E G+ +  +
Sbjct: 551 HFDFAKPELKMFKIFNFIREQYPALKSGWKSVKLRNWTEYVHFPNSGKTPTEVGVWSIVR 610

Query: 176 GFL 184
           G L
Sbjct: 611 GAL 613


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 603 FEAHSLLTAKQFISALDVDITAKVSYFEKHLFNMMMKTGKLYRII 737
           F+  S LT+K+F+  L +     + YF   +F M++  GKL + +
Sbjct: 193 FQRDSQLTSKRFLRLLCLAAVFFLGYFPLTIF-MVVANGKLQQFL 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,361,965
Number of Sequences: 5004
Number of extensions: 70614
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)