Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a13
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0436 + 14006683-14006863,14007618-14008036                       30   1.9  
10_02_0144 + 5815403-5815520,5815551-5816314                           30   2.5  
05_03_0197 + 9607586-9607592,9607652-9607940,9608599-9608817,961...    29   3.3  
08_01_0216 - 1717696-1718265,1718856-1720082,1720558-1720627,172...    29   4.3  
12_01_0997 - 10114571-10114864,10115422-10115795,10115910-10116144     29   5.7  
04_03_0461 - 16165126-16165419,16165947-16166195,16168510-161686...    29   5.7  
04_03_0454 - 16071490-16071534,16071849-16071980,16072523-160727...    29   5.7  

>05_03_0436 + 14006683-14006863,14007618-14008036
          Length = 199

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 284 VILETIYLEFHLLNHPL*KELRGFSKY 364
           V+L+   LEF+LL H   KEL+ FS+Y
Sbjct: 162 VLLDLAKLEFNLLQHVHLKELKSFSQY 188


>10_02_0144 + 5815403-5815520,5815551-5816314
          Length = 293

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 100 ALVTPCTISYRCQGTLRSRHRYIRKRLPSHQTW 198
           +L  P T S RC+  + ++ R IR R  S  TW
Sbjct: 115 SLAAPATSSTRCRFAVANKRRQIRARRSSSPTW 147


>05_03_0197 +
           9607586-9607592,9607652-9607940,9608599-9608817,
           9610270-9610405,9610975-9611223,9611523-9611816
          Length = 397

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 272 ETHKV-ILETIYLEFHLLNHPL*KELRGFSKY 364
           E H V +L+   LEF+LL H   KELR FS++
Sbjct: 69  EGHNVDLLDLAKLEFNLLQHVHLKELRNFSQW 100


>08_01_0216 -
           1717696-1718265,1718856-1720082,1720558-1720627,
           1721579-1721602,1722073-1722140
          Length = 652

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -2

Query: 201 VPGLMRRKPFSDVSMPASKGALTSI 127
           +PGL RRK  SDVS   S  +LTSI
Sbjct: 268 LPGLNRRKSISDVSSCLSISSLTSI 292


>12_01_0997 - 10114571-10114864,10115422-10115795,10115910-10116144
          Length = 300

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 110 PHAQFPIDVKAPLEAGIDTSEKGFLRIKPGTNELTFVVSHN 232
           P  Q  ++VK P+   IDTS  G L I+ G  E+   V H+
Sbjct: 179 PWIQLGVEVKGPVHHDIDTSANGMLFIRCGV-EVKGPVHHD 218


>04_03_0461 -
           16165126-16165419,16165947-16166195,16168510-16168645,
           16171251-16171469,16172738-16173116,16173660-16173918,
           16176052-16176315
          Length = 599

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +2

Query: 248 LEEGPCDTETHKVILETIYLEFHLLNHPL*KELRGFSKY 364
           LE G  + E   V+L+   LEF+LL H   KEL+ FS++
Sbjct: 265 LEYGQ-EEECIVVLLDLAKLEFNLLQHVHLKELKAFSQW 302


>04_03_0454 -
           16071490-16071534,16071849-16071980,16072523-16072771,
           16075090-16075225,16077833-16078051,16079320-16079698,
           16080238-16080478
          Length = 466

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +2

Query: 248 LEEGPCDTETHKVILETIYLEFHLLNHPL*KELRGFSKY 364
           LE G  + E   V+L+   LEF+LL H   KEL+ FS++
Sbjct: 171 LEYGQ-EEECIVVLLDLAKLEFNLLQHVHLKELKAFSQW 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,926,529
Number of Sequences: 37544
Number of extensions: 390539
Number of successful extensions: 781
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)