Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3a02
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    38   0.001
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    32   0.060
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    32   0.080
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    29   0.43 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    29   0.74 
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    29   0.74 
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   2.3  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    27   2.3  
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    25   6.9  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   6.9  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   9.1  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    25   9.1  

>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 27/82 (32%), Positives = 42/82 (51%)
 Frame = +3

Query: 387  SLNLSGNAISTLSRELYLPNLQKLDLSRNQITLIESDAFYNMTALQKLDLSQNHISNVYK 566
            +L LS N   TL  +     ++ L+L+  Q+  +      +M  L+ LDLS N+IS++  
Sbjct: 849  NLYLSNNTFVTLDCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDI-- 906

Query: 567  EMFKSLINLERLILAQNQISVM 632
            E  K L  + RL L  N+I  M
Sbjct: 907  ESLKPLQMIHRLYLVGNRIKKM 928



 Score = 30.7 bits (66), Expect = 0.18
 Identities = 24/82 (29%), Positives = 43/82 (52%)
 Frame = +3

Query: 390 LNLSGNAISTLSRELYLPNLQKLDLSRNQITLIESDAFYNMTALQKLDLSQNHISNVYKE 569
           LN   N +S+L+    L NLQ LD+S NQ  L +     ++  L++L +  NH+ ++  +
Sbjct: 651 LNAVENRLSSLTSFSNLLNLQYLDISYNQ--LEDLTGLSSLIHLRELKVDSNHLWSL--D 706

Query: 570 MFKSLINLERLILAQNQISVMA 635
             + L  L +L    N+I  ++
Sbjct: 707 GIQHLDGLLKLSACNNRIKELS 728


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 32.3 bits (70), Expect = 0.060
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 390 LNLSGNAISTLSRELYLPNLQKLDLSRNQIT-LIESDAFYNMTALQKLDLSQNHISNVYK 566
           L LS N +++LS    +P+L+KLD+  N IT ++E       T  ++  LS N  +  Y 
Sbjct: 408 LVLSRNHLTSLSGLENVPSLEKLDIRDNSITDVVEFRRLVGNTNFEEAYLSLNPFTKTYS 467

Query: 567 EMFKSLINLER 599
               ++ N  R
Sbjct: 468 SYRITIFNYFR 478


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 31.9 bits (69), Expect = 0.080
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +3

Query: 381 VVSLNLSGNAISTLSRELYLPNLQKLDLSRNQITLIESDAFYNMTALQKLDLSQNHIS 554
           + +L L GN I  +     L NL+KL + +N+IT  E+  F  +  L  L +  N I+
Sbjct: 150 LTNLELGGNKIRVIENLDTLVNLEKLWVGKNKITKFEN--FEKLQKLSLLSIQSNRIT 205



 Score = 26.6 bits (56), Expect = 3.0
 Identities = 24/63 (38%), Positives = 31/63 (49%)
 Frame = +3

Query: 444 NLQKLDLSRNQITLIESDAFYNMTALQKLDLSQNHISNVYKEMFKSLINLERLILAQNQI 623
           NLQ L L +NQI  IES        L +LDL  N I  +  E   ++ NL  L L+ N I
Sbjct: 63  NLQSLCLRQNQIKKIESVP----ETLTELDLYDNLIVRI--ENLDNVKNLTYLDLSFNNI 116

Query: 624 SVM 632
             +
Sbjct: 117 KTI 119


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 441 PNLQKLDLSRNQITLIESDAFYNMTALQKLDLSQN 545
           P+L+ L L  N+I L ++ +F N+  LQ L L+ N
Sbjct: 217 PSLEVLYLEANEIILSKATSFKNLQFLQTLSLANN 251


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = +3

Query: 438 LPNLQKLDLSRNQITLIESDAFYNMTALQKLDLSQNHISNVYKEMFKSLINLERLILAQN 617
           L  L+ L+ S N ++ I S    ++  L+ L L  N +SN   +    L NLE + L+ N
Sbjct: 547 LSQLETLNFSHNLLSQISSK-IGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLSYN 605

Query: 618 QISVMA 635
            I+ +A
Sbjct: 606 AITNIA 611


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 411 ISTLSRELYLPNLQKLDLSRNQITLIESDAFYNMTALQKLDLSQNHISNVYKE 569
           + +LS E Y  +   + L R+ +TL  SDA YN +A ++   +     N + E
Sbjct: 207 LDSLSEESYKDSTLIMQLLRDNLTLWTSDAEYNQSAKEEAPAAAAASENEHPE 259


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +3

Query: 264 AGEGASA--EPLPGELKLKCGGSPAPITELKEIDLSKLWTIVVSLNLSGNAISTLSRELY 437
           A E +S    P+P  +K K   S   I  L+E+D  K+ TI       G + S++S  L 
Sbjct: 505 ASESSSVPPRPIPSAMKGKAPASAISIEALEELDPPKITTI------DGESPSSISSRLP 558

Query: 438 LPNLQK 455
             NL++
Sbjct: 559 SSNLEQ 564


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/61 (21%), Positives = 32/61 (52%)
 Frame = +3

Query: 378 IVVSLNLSGNAISTLSRELYLPNLQKLDLSRNQITLIESDAFYNMTALQKLDLSQNHISN 557
           ++V+ +L  + +S    E++ PN+++L     ++T   + +  + T    L  + NHI+ 
Sbjct: 16  VIVADDLGWSDVSPFGSEIHTPNIERLAKEGVRLTNFHTASACSPTRSMLLSGTDNHIAG 75

Query: 558 V 560
           +
Sbjct: 76  L 76


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/52 (21%), Positives = 25/52 (48%)
 Frame = +3

Query: 462 LSRNQITLIESDAFYNMTALQKLDLSQNHISNVYKEMFKSLINLERLILAQN 617
           + R  +   +SD    +     +DL    ++N+  + + SL N E +++ +N
Sbjct: 45  VDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKN 96


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +3

Query: 357 DLSKLWTIVVSLNLSGNAISTLSREL--YLPNLQKLDLSRNQITLIESDAFYNMTA-LQK 527
           +LS+   I   + L    +S    EL     +LQ LD+ +++I   E D  Y   A L+K
Sbjct: 720 NLSEAKPIFDEIELLDKRLSETKTELSDLQGDLQGLDIRKDEIQ-SELDTLYLRRANLEK 778

Query: 528 LDLSQNHISNVYKEM 572
           L L    ISN+ +E+
Sbjct: 779 LQLLVKDISNLEEEI 793


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
 Frame = +3

Query: 300 ELKLKCGGSPAPITELKEIDLSKLWTIVVSLNLS-GN---AISTLSRELYLPNLQKLDLS 467
           EL L+CG     +   + ID  ++W+ + S  +S GN   A  T  +  Y   L  L L 
Sbjct: 657 ELALECGNLETALELARTIDRPEVWSRLASDAMSYGNHKIAEITFQKLRYFEKLSFLYLI 716

Query: 468 RNQITLIESDAFYNMTALQKLDLSQNHISNVYKEMFKSLINL 593
                 ++  A         L L QN   ++Y    +S IN+
Sbjct: 717 TGNAEKLQKMAIIAEKRNDTLSLFQN---SLYLNEVESRINI 755


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 324 SPAPITELKEIDLSKLWTIVVSLNLSGNAISTLSRELYL 440
           +P P+   ++ + + LW +  SL++ G  +  ++  LYL
Sbjct: 51  TPLPVNRSQQAN-APLWQLSFSLSILGTLLFVIAESLYL 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,616
Number of Sequences: 5004
Number of extensions: 45550
Number of successful extensions: 145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)