Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30p21
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394...    29   3.7  
09_04_0170 + 15310240-15310397,15310523-15310605,15310689-153106...    29   4.9  
10_08_0801 + 20670795-20671730                                         28   6.5  
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    28   6.5  
06_03_0784 - 24557089-24557198,24557296-24560725                       28   8.6  

>04_04_0835 +
           28538032-28539006,28539113-28539203,28539291-28539448,
           28539543-28539594,28539707-28539786,28539890-28539983,
           28540078-28540633,28541160-28541259,28541576-28541617,
           28542445-28542588
          Length = 763

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 324 GIKRILIP-SATNYQEVFNLNSMMQAEQLI--FHLIYNNEEAVNDDREQPNDY 473
           G++R+LI  SA + + V        A+  +  FH  Y+  E V ++ +QP++Y
Sbjct: 711 GLERVLISGSAASQKHVGKAEKATAADSEVSRFHSYYSTVETVEENLQQPSNY 763


>09_04_0170 +
           15310240-15310397,15310523-15310605,15310689-15310697,
           15310852-15310940,15311514-15311587,15311731-15311781,
           15311887-15311963,15313865-15314463
          Length = 379

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 463 QTTMTQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGA 618
           +TT T     +S  S+P+P +A+ D+G S  C    P D   Y+     DGA
Sbjct: 302 ETTTTSSTTTSS--SSPSPPQATKDDGASPQC--SFPEDIQTYFGCAAEDGA 349


>10_08_0801 + 20670795-20671730
          Length = 311

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 718 LSKHSIISLSSVNELTLPKSLKLLQSRCQILPCRLHP 608
           L+ H  ++ S + +   PK L   + R   LP RLHP
Sbjct: 12  LTSHKAVAPSFLLDCARPKKLSYARVRSTSLPVRLHP 48


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 493 ASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLAA 672
           A   +AP P  AS D G+ +  D    +   ++      +G ++   D + +AAS F+AA
Sbjct: 50  ADTPAAPAPPPASLDGGHGDTSDGSGSDSDSDW------EGVESTELDEDFSAASAFVAA 103

Query: 673 S 675
           S
Sbjct: 104 S 104


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +3

Query: 141 ACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDE--DDNQFKMTIARHLVGN 314
           A + Y      D Y    W IC SH+  + +++K +L   D+  D   F  ++ +  + N
Sbjct: 228 AQLIYNDKRIEDNYDLRAW-ICVSHVFDKVRITKEILTSIDKTIDLTNFNFSMLQEELKN 286

Query: 315 KERGIKRILIPSATNYQE 368
           K +  K +L+     Y E
Sbjct: 287 KVKMKKFLLVLDDVWYDE 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,409,542
Number of Sequences: 37544
Number of extensions: 365052
Number of successful extensions: 846
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)