Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30p13
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 260 2e-70
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 32 0.090
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 1.9
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.5
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 4.5
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 26 5.9
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 26 5.9
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 7.8
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 7.8
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 7.8
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 260 bits (636), Expect = 2e-70
Identities = 129/175 (73%), Positives = 148/175 (84%), Gaps = 1/175 (0%)
Frame = +1
Query: 172 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 351
+ ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDALDKIRY+SL+DP LD+ K
Sbjct: 2 SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEK 61
Query: 352 ELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQF 531
+L+I+I P+K L+I DTGIGMTK DL+NNLG IAKSGTK FMEA +GADISMIGQF
Sbjct: 62 DLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADISMIGQF 121
Query: 532 GVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEP-LGRGTKIVL 693
GVGFYS+YLVAD+V V SKHNDDEQY+WESSAGGSFTV D+ P L RGT+I L
Sbjct: 122 GVGFYSAYLVADKVQVVSKHNDDEQYIWESSAGGSFTVTLDTDGPRLLRGTEIRL 176
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 31.9 bits (69), Expect = 0.090
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +1
Query: 199 AEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIKIIPN 378
AEI L +N + R++++N L KI DPSK ++Y K+
Sbjct: 2433 AEIGPLSPFKFTDASNNTKFISRDIVANG---LSKILILKDYDPSKAVRKPKIYSKVSTE 2489
Query: 379 KNEGTLTIIDTGIGMTKADLVNNLG 453
+ + L D+GI ++ L+ +G
Sbjct: 2490 ERDFNLEQFDSGIDLSVKFLLEGIG 2514
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 229 INTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIK 366
+N S +EI L++ I + D I+Y S S ++ +Y+K
Sbjct: 377 LNEQISKEEIDLQKKIEKRNSTYDLIKYRSRVHTSLIEERNSIYLK 422
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -3
Query: 482 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 324
KA++P F + +AL+ PI ++ I +F+ IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 381 LVGNDLDVQLFATIEF*RIRERFIPDFV*SVR*IGNQLTKENFFV 247
LV + LDV F + ++ F+ D+ SVR N+ K NFF+
Sbjct: 295 LVISMLDVDGFRIDKATQMTVDFLVDWAKSVRLCANRFNKSNFFI 339
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 459 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 352
DG V I G +DDR+ L+ + NDL+V L
Sbjct: 2 DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 321 HGSVKTR*WQRAVHQDHSQ-QERGHSYDHRYRYWYDQGRFGEQF 449
H S K +R+ D + +ER H+ +R+R YD G F + +
Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSGYFKKHY 236
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +1
Query: 259 FLRELISNSSDALDKIRYESL 321
F+R+++ +D L+K+R++SL
Sbjct: 224 FIRKVVLTKADGLEKLRFQSL 244
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +3
Query: 363 QDHSQQERGHSYDHRYRYWYDQGRFGEQF 449
+DH++++ H+ +Y YD R E +
Sbjct: 603 KDHTKEQAWHAMQQGIKYMYDNWRIWENY 631
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 7.8
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 139 KKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYES 318
+K + M T A T +F + Q++ LI S R+ IS D K YES
Sbjct: 389 EKFDKHMNTLFAITHTASFNTSV-QVLMLIFQASAS------RDFIS---DRYYKSLYES 438
Query: 319 LTDPSKLDSGKE-LYIKII 372
L DP S K+ LY+ ++
Sbjct: 439 LLDPRLTTSSKQSLYLNLL 457
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 145 MPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLREL---ISNSSDALDKIRYE 315
+ E++ + A+ E+F A+L +N NKE + +L +S S L +++ +
Sbjct: 762 LTEKLNKKNADTESFKNTIREAELSKKALNDNLGNKENIISDLKNKLSEESTRLQELQSQ 821
Query: 316 SLTDPSKLDSGKE 354
D +++++ E
Sbjct: 822 LNQDKNQIETLNE 834
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,110
Number of Sequences: 5004
Number of extensions: 61867
Number of successful extensions: 197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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