Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30p11
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch...    27   1.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   6.5  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   8.5  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   8.5  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    25   8.5  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.5  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   8.5  

>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 129

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 365 YEDMFELKPYWIFFVLLTLSAFIAKRKYLMK 273
           Y+    +KP    FVL+ + A+ A RKY++K
Sbjct: 99  YDSSQPVKPAMWLFVLVMVVAYFAFRKYVLK 129


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +3

Query: 111 LCRFENNYNNCQRPERK*QH----KMILRIDLKIFEDAKIK 221
           +CR+EN YN     E    H    +  +R ++   E AKI+
Sbjct: 363 VCRYENRYNKLHASEYNHHHDWAVRQAIREEVAAVEAAKIR 403


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = -1

Query: 224 SFYFCIFKNF*IYSENHFMLLFSFWSLTIIIIIFEP---AKRNNTESYCFNI*TFFLNLK 54
           SFY C+   F +++E+  +    F ++  +  IF+     KR+ T +    + T FL   
Sbjct: 74  SFYLCVKSIFHVHNESVNIWTHLFGAIVFLFFIFKSELILKRDTTTAEDVYVITVFLFSA 133

Query: 53  VFLTY*STLY 24
             +   ST Y
Sbjct: 134 FTMLGCSTFY 143


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 335 WIFFVLLTLSAFIAKRKYLM 276
           W+FF+LL  S+ I+   YL+
Sbjct: 192 WMFFILLNASSAISMSLYLL 211


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 211 QK*KLYIFSFPTVAYANPISYFIKYFRFAIKALSVNKT 324
           QK ++++  FPT    + +SY ++  + A++ L + KT
Sbjct: 230 QKVRVFLAFFPTNWCFSSMSYMVQSKKAALRLLGMTKT 267


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 371 HNYEDMFELKPYWIFFVLLTLSAFIAKRKYLM 276
           H    +F LKP+   FVLL  ++++A   + M
Sbjct: 129 HRPWKLFSLKPFTAAFVLLLAASYLATACFRM 160


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 144 DNYYNYFRTCKEKQH*KLLLQYLDLFFKSE-SFFN 43
           D  +NY  +C+E Q   LL+Q  ++  KS+ S+ N
Sbjct: 473 DKAWNYLASCEEIQIICLLMQNRNISLKSQISYLN 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,640,292
Number of Sequences: 5004
Number of extensions: 29345
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)