Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30p11
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    36   0.017
AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical ...    33   0.16 
Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical pr...    30   0.83 
U00067-9|AAK20073.1|  364|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z83237-6|CAE17879.1|  549|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    28   3.3  
AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical...    28   4.4  

>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -3

Query: 249 NSRKTENV--KFLFLHLQKFLNLF*ESFYVVIFVLVVDNYYNYFRTCKEKQH*KLLLQYL 76
           NS +T  V    LF  L   L +  ++F+V+IFVL V+ ++ YF    EK    L ++  
Sbjct: 92  NSLQTNRVLIALLFFALFNVLYIITQAFHVLIFVLAVERFFIYFFPSSEKIFKSLSIKIK 151

Query: 75  DLFF 64
            L+F
Sbjct: 152 HLYF 155


>AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical
           protein Y68A4A.2 protein.
          Length = 309

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 228 VKFLFLHLQKFLNLF*ESFYVVIFVLVVDNYYNYFRTCKEK 106
           +  LF  L   L +  ++F+V+IFVL V+ ++ YF    EK
Sbjct: 102 IALLFFALFNVLYIITQAFHVLIFVLAVERFFLYFFPSSEK 142


>Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical
           protein F59D12.3 protein.
          Length = 356

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 339 LLDFLCFINTKRFYRKT--KVFNEIRNRIRVSNSRKT 235
           LL+  CF+NT R + KT   +  E RN I V    KT
Sbjct: 131 LLNLFCFLNTPRKFSKTGNSLTVEFRNHISVETCNKT 167


>U00067-9|AAK20073.1|  364|Caenorhabditis elegans Hypothetical
           protein F54E7.1a protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 9/41 (21%)
 Frame = -1

Query: 392 STHYVPKHNYEDM-------FEL--KPYWIFFVLLTLSAFI 297
           S H +P+H  ED+       F +  KP W+ FVLL+L+ FI
Sbjct: 11  SVHMLPRHVKEDVEPIHLLGFNIARKPKWLQFVLLSLAIFI 51


>Z83237-6|CAE17879.1|  549|Caenorhabditis elegans Hypothetical
           protein R06B9.6 protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 173 FMLLFSFWSLTIIIIIFEPAKRNNTESYCFNI 78
           + +LFSFW +     + +   RNN +SY FN+
Sbjct: 315 YTVLFSFWLIFAGEHLIDDNTRNNLKSYRFNL 346


>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 231 NVKFLFLHLQKFLNLF*ESFYVVIFVLVVDNYYNYF 124
           +V F F  L   L +  + F+V++FVL V+ ++ YF
Sbjct: 84  SVFFCFYSLFSSLCIITQVFHVLLFVLAVERFFIYF 119


>AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical
           protein Y102A5C.25 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 228 VKFLFLHLQKFLNLF*ESFYVVIFVLVVDNYYNYFRTCKEK 106
           + F+   L   LN+  + F+V++FVL V+    YF    EK
Sbjct: 98  ISFIIQGLYSSLNIITQVFHVLLFVLSVERGSLYFFPSSEK 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,762,826
Number of Sequences: 27780
Number of extensions: 155490
Number of successful extensions: 390
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)