Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30p07
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   0.26 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.61 
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    24   1.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.2  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   3.2  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   3.2  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   7.5  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    21   9.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 416 CGGDYADFQYLKDIIQQKIIDE 481
           C GD  D   ++DI+ Q ++DE
Sbjct: 108 CPGDLYDSDIIQDIVPQNVLDE 129


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 572 DPSYSSCCRGHESTSSAENGA*AGDHLQHSSHQ 474
           DPS SSC +G  S++     A +     H  HQ
Sbjct: 132 DPSVSSCHQGFSSSTWCNYSAYSSASRHHVDHQ 164


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 224 PSRHGVQDFTAHSASPITTTTTVIGVKFDKGC 319
           PS+HG+ D TA    P   T  +  + +++ C
Sbjct: 267 PSKHGLNDATAAPGEPGPYTVNLGSLGYNEIC 298


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 326  AGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKD 454
            AG+   + G LA +  C  V+K    ++    G    + YL+D
Sbjct: 2092 AGEETRARGFLAYYEICTNVIKKGWKVVRDRRGRIGPYAYLRD 2134


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 620 RVHHPEYRRPRSCSRG 573
           R H PE  RP+  S G
Sbjct: 70  RSHEPEMERPKGASNG 85


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 620 RVHHPEYRRPRSCSRG 573
           R H PE  RP+  S G
Sbjct: 90  RSHEPEMERPKGASNG 105


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 578 WNSYVVAGIQDGEPFLGAVDKLGTAYEDAVISNGLGAYMATPL 706
           W+   +   Q+G      +D L T Y   +I N L  Y A  L
Sbjct: 113 WDKVEIVRSQEGRFEEAVIDYLFTVYLLPIIINPLVLYEARKL 155


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -1

Query: 133 HKSHCYII 110
           HK HCY++
Sbjct: 36  HKEHCYVL 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,757
Number of Sequences: 336
Number of extensions: 3427
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)