Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30p01
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch... 46 9e-07
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 2.4
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo... 25 2.4
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family... 25 3.1
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 25 3.1
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 24 4.2
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ... 24 4.2
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 24 5.5
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 24 5.5
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 23 7.3
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 23 7.3
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 23 7.3
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 23 7.3
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 23 9.6
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 23 9.6
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 23 9.6
>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 77
Score = 46.4 bits (105), Expect = 9e-07
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 100 DDDPVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRDCINK 240
+ D + L+K GC+E H ++ +C +T DWRKC + FR C K
Sbjct: 14 EKDVWDTALEKGGCVEEHLRLNDCYWDTHDWRKCTEQMEEFRKCWEK 60
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 2.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 86 NRSAVMMIPWKAC*KKLAVWNYTIK 160
N A+ I WK K + WNY K
Sbjct: 169 NSDAIKSIAWKEKDKSIKTWNYQPK 193
>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 25.0 bits (52), Expect = 2.4
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 143 WNYTIKCRNASPKRKTGE--SVKPQLIISEIVSTNINRKKQLK 265
WN+ I C N K++ G+ + + I I+ N N + K
Sbjct: 25 WNHDITCLNFKVKKRRGDFYVINERFFIKYIIKKNKNPQNLTK 67
>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 196 FSSLSFRRCIPALYSVVPDSQFFSACLPRD 107
FS+ F + I Y V P+S+FF+ RD
Sbjct: 214 FSTWFFWQLIKGRYEVAPESKFFNYVDVRD 243
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 134 LAVW---NYTIKCRNASPKRKTGESVKPQLIISEIVS 235
+ VW NY +C N + K ES++P+ I V+
Sbjct: 252 VTVWSAPNYCYRCGNVASVMKVDESLEPEFRIFSAVA 288
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 24.2 bits (50), Expect = 4.2
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 86 NRSAVMMIPWKAC*KKLAVWNYTI-KCRNASPKRKTGESVKPQLIISEIVSTNINRKKQL 262
N+S +P K ++ + + +C+++SPKR + VK + I S +K L
Sbjct: 185 NKSVEFPMPLKERQRRRIALQWILGECKSSSPKRLSDRIVKEIIAIRSKTSNCFKKKDHL 244
>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 139 CLELHYKVQECIAETKDWRKCQTAV 213
C EL VQE + ++K++ +C T V
Sbjct: 177 CRELTITVQEALEKSKEFIRCWTNV 201
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 23.8 bits (49), Expect = 5.5
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 70 TIKPREQIGSDDDPVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRD 228
T+K Q S +D E ++ C E+ V++ KD K T+ NN +
Sbjct: 245 TLKSSGQYVSKEDITELFAEQVKCSEIAQVVRDEQDTAKDPVKALTSTNNVEE 297
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 143 WNYTIKCRNASPKRKTGESVKP 208
WNY I+C+ P RKT + P
Sbjct: 750 WNYLIQCK--KPARKTPLLIPP 769
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 194 ESVKPQLIISEIVSTNINRKKQLKINIKS 280
E KP+ + + + TNI + ++ KINIK+
Sbjct: 15 ELCKPEKVNKQNLFTNIIKPQKDKINIKT 43
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 194 ESVKPQLIISEIVSTNINRKKQLKINIKS 280
E KP+ + + + TNI + ++ KINIK+
Sbjct: 35 ELCKPEKVNKQNLFTNIIKPQKDKINIKT 63
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 194 ESVKPQLIISEIVSTNINRKKQLKINIKS 280
E KP+ + + + TNI + ++ KINIK+
Sbjct: 15 ELCKPEKVNKQNLFTNIVKPQKDKINIKT 43
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 194 ESVKPQLIISEIVSTNINRKKQLKINIKS 280
E KP+ + + + TNI + ++ KINIK+
Sbjct: 15 ELCKPEKVNKQNLFTNIIKPQKDKINIKT 43
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 23.0 bits (47), Expect = 9.6
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +2
Query: 89 RSAVMMIPWKAC*KKLAVWNYTIKCRNASPKRKTGESVKPQLIISEIVSTNINRKKQLKI 268
R+ V IP + K+ +N + KRK S++ II+EI + +I+ K+
Sbjct: 454 RTVVTFIPERLLCKR---FNVALPYGQEKQKRKNISSIENVPIIAEIENKSIDSIDTRKL 510
Query: 269 NIKS*YDRKKK 301
N + K K
Sbjct: 511 NRPQDIEEKPK 521
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 208 RFDTFSSLSFRRCIPALYSVVPDSQ 134
RF ++ CIP L SVV SQ
Sbjct: 274 RFQALHRINMIECIPELQSVVCASQ 298
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 149 SSRQPVFFSMPSTGSSSLP 93
S+ QP+ F++P+T S P
Sbjct: 219 SAAQPIIFNLPATVEMSTP 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,214,544
Number of Sequences: 5004
Number of extensions: 23044
Number of successful extensions: 71
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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