Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30o24
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    29   0.36 
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    29   0.48 
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    27   1.9  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    27   2.6  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   3.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.5  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    25   5.9  

>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -1

Query: 571 AIFRAEAVRRRRTGKQYYSPWRDSECSQHSFLCKPYDNWVIV----FGILNFIDV 419
           +IFRA AV    TG  Y     DS  S  SFL  P+D W ++    +G+L  I++
Sbjct: 163 SIFRARAV----TGISYLFLAIDSSGSLFSFLSLPFDRWDVLAAVDYGLLFIIEM 213


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -2

Query: 243 LLIEIDNLMVR*TSIFIFFYYINYSSTNYLASYIATIDIRRCYSSNAKHT 94
           L+I +D L+    S+F  F+++ + +TNY  +  +T+DI + +  N   T
Sbjct: 132 LIIALDALLT--VSLFGLFHHLMFLTTNYSYTINSTLDISKGFFINVLST 179


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 556 EAVRRRRTGKQYYSPWRDSECSQHSF 479
           EA+RR+  GKQ+  P+R S+ ++  F
Sbjct: 328 EALRRKHEGKQHIIPFRQSKLTELLF 353


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 402 GHVSQKVSCTILYDTASIFHESRGF*IGLCDFLFFLSLKFVES*FQSVHIHLCLLIEI 229
           G V+  + CT++      F  S+G+  G   F FFLSL   +S  QS    L L++ +
Sbjct: 218 GVVALSIVCTMVSTGYFYFANSKGYTTGSKVFAFFLSL--AQSARQSYFGFLLLIVSL 273


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -2

Query: 306 LFFLSLKFVES*FQSVHIHLCLLIEIDNLMVR*TSIFIFFYYINYSSTNYL 154
           L  L+LKFV+  FQ+  I + LL + D+L++   +    F +I +   N L
Sbjct: 641 LMKLTLKFVDDLFQNDGIFIKLLAKFDSLILLGETSESLFSFIMWLKINDL 691


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 325  LESTRFVKYRSCIVQYCARYLLRHVALAGNTKRQ*NLIFQI 447
            L ST  V + + I+QY    +L      GN K+Q   + Q+
Sbjct: 1685 LLSTYMVGFSTSIIQYIIHLILLEFDFNGNNKKQKEYVTQL 1725


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -2

Query: 174 YSSTNYLASYIATIDIRRCYSSNAKHTKRNVDLSQSQARDPL 49
           Y+    LA  I  +DI   YSS  K  KR  +     A  PL
Sbjct: 86  YNQAKKLAKSIRNLDIVCVYSSPQKRAKRTAEEITKVANCPL 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,115
Number of Sequences: 5004
Number of extensions: 44119
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)