Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30o24
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0750 + 10909130-10909616,10912257-10912916,10913139-109135...    30   1.1  
12_02_1188 + 26801833-26802225                                         29   2.0  
05_01_0381 + 2981762-2982075,2982302-2982658,2982752-2982800           29   2.6  
12_01_0908 - 8823782-8826124                                           29   3.4  
01_06_0323 - 28476459-28476915,28477075-28477525,28477623-284779...    27   8.0  

>03_02_0750 +
           10909130-10909616,10912257-10912916,10913139-10913544,
           10914376-10914757,10914918-10915679,10916106-10916165,
           10916695-10917105
          Length = 1055

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 546 GGGGRGNSTIRLGGIASAHSTAFYANLTITGLSYL 442
           GGGGRG +++ +  +A+A   AF    T  G+SY+
Sbjct: 242 GGGGRGTASLAVAALAAAAVVAFLEG-TARGVSYV 275


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 570 PFSELKRCGGGGRGNSTIRLGGIASAH 490
           PFS   R GGGG G+S  R    A+AH
Sbjct: 22  PFSPAPRRGGGGGGSSGKRSSSAAAAH 48


>05_01_0381 + 2981762-2982075,2982302-2982658,2982752-2982800
          Length = 239

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 225 CQFQSININEYARSGINFQQTLN*EKIG--SHINLSRIHAIREISKLYRTILCTIPFATR 398
           C + S  ++   R G+NF + ++  + G  SH  L  ++  RE      ++LC  P A  
Sbjct: 108 CAWASEAVSVLLRDGLNFLRVVDLRRPGDASHHRLVMLNVTREALGRAISVLCIHPLAAA 167

Query: 399 GLGRQHKTSMKFNIP 443
              +  +  ++  +P
Sbjct: 168 AAAKTMQCELELFVP 182


>12_01_0908 - 8823782-8826124
          Length = 780

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -2

Query: 561 ELKRCGGGGRGNSTIRLGGIASAHSTAFYANLTITGLSYLEY 436
           EL  CGGGG G   +R    AS  S A   +L + G   L Y
Sbjct: 19  ELHGCGGGG-GGLALRRAHAASLVSGALATSLPLAGALLLSY 59


>01_06_0323 -
           28476459-28476915,28477075-28477525,28477623-28477904,
           28478089-28478118,28480560-28481433
          Length = 697

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 549 CGGGGRGNSTIRLGGIASAHSTAFYANLTIT 457
           C GGG G + + LG  +   S   YA+LT++
Sbjct: 81  CDGGGGGKAVMMLGNDSYTVSRIDYASLTVS 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,924,616
Number of Sequences: 37544
Number of extensions: 257718
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)