Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30o23
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0066 + 25307863-25307871,25308431-25308570,25308712-253087... 34 0.090
09_02_0374 - 8112021-8112820,8112908-8113152,8113256-8113455,811... 30 1.5
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 30 1.5
02_05_0891 - 32554355-32555305 30 1.9
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 3.4
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 29 3.4
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 29 3.4
09_04_0162 + 15245354-15245458,15245558-15245629,15245793-152466... 29 4.5
07_01_0245 - 1803170-1803887,1803971-1804641 28 5.9
01_06_1510 - 37859664-37861319 28 7.8
>05_06_0066 +
25307863-25307871,25308431-25308570,25308712-25308754,
25308994-25310022
Length = 406
Score = 34.3 bits (75), Expect = 0.090
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +3
Query: 492 KIDDLTQKLTVANADLA--EA-NRSLILFANEMIVARRDAETARQDCENARRENGA 650
+ID+L KLT +AD+A EA N L+ A E A ++ T +D E+A RE+ A
Sbjct: 244 EIDELRAKLTSKDADIAAVEADNAELMKMAEEASHAVKETATKARDTEHALRESAA 299
>09_02_0374 -
8112021-8112820,8112908-8113152,8113256-8113455,
8113584-8114235,8114369-8114661
Length = 729
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 535 IWRKPTDRSFCLPTK*LWLDATLKRLGKIAKTRAAK-TAQLANRM 666
+W+KP D SF L W+ +R+ K+ + A A+++NR+
Sbjct: 635 LWQKPMDDSFSLDLSVAWVMQMQERIQKVTELATADGIAEVSNRL 679
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +3
Query: 162 AKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAPDSVAKQGDPLYLHPHTVLIT 341
++D++ S K + R + GK T E+ Q+ H + +LH VL+T
Sbjct: 677 SRDVSRS-KDMRFFRPLHCLSHGKQMPTAEYTSQLPGHVDEGDQGVNAMQWLHKEPVLVT 735
Query: 342 KS--GVIQLIMKSKLPYAIELQEWLLEEVI 425
S G +I+K +P I + L +E+I
Sbjct: 736 VSGDGRFYIIVKVGVPTLIGVSHILSQEMI 765
>02_05_0891 - 32554355-32555305
Length = 316
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 260 PNPAPCSR*RGKAGRPAVFAPTHSAHYQIWRDSTDNEVQI 379
PNPAP G P V +P A ++IW ST++EV+I
Sbjct: 112 PNPAPKQGAEGNG--PKVSSPKRQAFHRIW--STEDEVRI 147
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 353 HARFGNEHCVWVQIQRVALLCHA 285
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -2
Query: 577 SLANKMSDRLASAKSALATVNFCVRSSILAITSFVSISTAGAYL 446
+L +SD LAS S+LA V +++ A+ S S S++ +Y+
Sbjct: 44 TLRASLSDLLASIPSSLALVGPAAAAAVAAVASSFSSSSSSSYV 87
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +3
Query: 498 DDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRENGAAGQ 659
DDLT+K+ VAN + + +L F RQ E RRE G A Q
Sbjct: 1038 DDLTKKVEVANENFKQLKDTLKSFEESTKGLETSLMMERQQNEANRREVGEAQQ 1091
>09_04_0162 +
15245354-15245458,15245558-15245629,15245793-15246617,
15247787-15248474,15248805-15248821
Length = 568
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/69 (20%), Positives = 34/69 (49%)
Frame = +3
Query: 372 SKLPYAIELQEWLLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDLTQKLTVANADLAEAN 551
+KLP ++ W L++ ++ PA +++N ++ + + L+QK+ D ++
Sbjct: 410 TKLPEKYFIERWRLKDKNHELFVPNTLMPAAVLESNPLL-RFNILSQKMIKLALDASKTK 468
Query: 552 RSLILFANE 578
+ + NE
Sbjct: 469 ENFVYVMNE 477
>07_01_0245 - 1803170-1803887,1803971-1804641
Length = 462
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -3
Query: 324 VGANTAGRPALPRYLEHGAGFGRHAQTSICTCRRRGHVLP 205
VG + P PR GAG G H TS C C+ R + LP
Sbjct: 11 VGNLSLKMPVAPR--PAGAGAGVHPSTSPCYCKIRLNKLP 48
>01_06_1510 - 37859664-37861319
Length = 551
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 317 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 409
AP H H+Q++R S +ALRHR R A
Sbjct: 24 APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,846,281
Number of Sequences: 37544
Number of extensions: 456943
Number of successful extensions: 1342
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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