Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30o21
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...   130   2e-31
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    27   1.8  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    27   3.1  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   4.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   5.4  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    25   9.4  

>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score =  130 bits (314), Expect = 2e-31
 Identities = 59/112 (52%), Positives = 78/112 (69%)
 Frame = +3

Query: 312 SKVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANL 491
           +K  MR+V +P HR TPL+  W K++ P+VEHLLLQVR NTK+R+VE++    TKD   L
Sbjct: 77  AKPQMRRVPIPPHRMTPLRNVWPKLYPPLVEHLLLQVRMNTKSRSVELRESKATKDPGAL 136

Query: 492 QKAADFVKAFIYGFEVXXXXXXXXXXXXFVESFEVKDVKTLNGDHLSRAIGR 647
           QK  DFV+AF  GF++            ++++FE+KDVKTL GDHLSRAIGR
Sbjct: 137 QKGMDFVQAFALGFDIDDAIALLRLDDLYIDTFEIKDVKTLQGDHLSRAIGR 188


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -3

Query: 233 LFNLHTISGVICSFALYIFKLHRLFSWQKIINTY 132
           +F+++ I G+I S+ L IF++ RL S Q +  +Y
Sbjct: 27  IFSVYIIIGLIISYLLQIFRIVRLGSSQGLSFSY 60


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 442 LVFVLNLTCSNKCSTIGVNIFSQLSLSGVYL 350
           L F L  TC  +  ++ +N F     SG+YL
Sbjct: 25  LTFFLLTTCQLRILSLSINAFCVFGASGIYL 55


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 117 METENISVDDFLPAKKTMKLKNIKRKATDDTGDGMEVEEPT 239
           ++  N   D F+P  KT  L N+      +TG+ +   EPT
Sbjct: 427 IDPSNQPSDQFIPLLKTCALCNLSTVNQTETGEWVVKGEPT 467


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 245  PNCGLFNLHTISGVICSFALYIFKL 171
            P  G+FN + I  V+  FA++I  L
Sbjct: 1051 PQAGIFNTYIIGSVLGQFAIHIVTL 1075


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +3

Query: 378 LKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQKAADFVKA 518
           LK FTP++ HL   V  N          G  T    +  + ADF KA
Sbjct: 249 LKDFTPLIHHLTNAVAKNFSANVTLAAYGSPTMG-ESYDEVADFAKA 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,731
Number of Sequences: 5004
Number of extensions: 46805
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)