Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30o21
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0105 - 836347-836769,837740-837937                              130   7e-31
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757...   130   7e-31
10_08_0890 + 21339976-21340198,21340293-21340402,21340652-213408...    29   3.2  
08_02_1275 - 25792148-25792227,25792457-25792488,25792590-257926...    28   7.4  

>03_01_0105 - 836347-836769,837740-837937
          Length = 206

 Score =  130 bits (315), Expect = 7e-31
 Identities = 56/107 (52%), Positives = 76/107 (71%)
 Frame = +3

Query: 327 RKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQKAAD 506
           RKV VP HR+ PLK++W+ I+TP+ EH+ + +R N K R VE+K   +T D++NLQK AD
Sbjct: 30  RKVPVPQHRFAPLKKAWMDIYTPVYEHMKIDIRMNLKARRVELKTRQDTPDVSNLQKCAD 89

Query: 507 FVKAFIYGFEVXXXXXXXXXXXXFVESFEVKDVKTLNGDHLSRAIGR 647
           FV AF+ GF++            +V+SFE+KDVKTL G+HLSRAIGR
Sbjct: 90  FVHAFMLGFDIADAVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGR 136


>01_06_0969 -
           33472588-33474480,33475543-33475623,33475692-33475740,
           33475866-33476281,33477208-33477447
          Length = 892

 Score =  130 bits (315), Expect = 7e-31
 Identities = 56/107 (52%), Positives = 76/107 (71%)
 Frame = +3

Query: 327 RKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQKAAD 506
           RKV VP HR+ PLK++W+ I+TP+ EH+ + +R N K R VE+K   +T D++NLQK AD
Sbjct: 44  RKVPVPQHRFAPLKKAWMDIYTPVYEHMKIDIRMNLKARRVELKTRQDTPDVSNLQKCAD 103

Query: 507 FVKAFIYGFEVXXXXXXXXXXXXFVESFEVKDVKTLNGDHLSRAIGR 647
           FV AF+ GF++            +V+SFE+KDVKTL G+HLSRAIGR
Sbjct: 104 FVHAFMLGFDIADAVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGR 150


>10_08_0890 +
           21339976-21340198,21340293-21340402,21340652-21340836,
           21341415-21341757
          Length = 286

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 342 PAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRN 446
           P  R+TP++ESW  I+     H  LQ  F+ + RN
Sbjct: 224 PTGRWTPMRESWGSIWRLDTNH-RLQAPFSIRIRN 257


>08_02_1275 -
           25792148-25792227,25792457-25792488,25792590-25792651,
           25792721-25792801,25793086-25793241,25793292-25793348,
           25793349-25793510,25793586-25793648,25793742-25793804,
           25793895-25793948,25794334-25794390,25794479-25794547,
           25795053-25795166,25795245-25795316,25795406-25795527,
           25796416-25796617
          Length = 481

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 256 QRSLEGTEKNIKKVQT-LMRVKLQCEKLRSQLTDIH 360
           +R L+ TE+ +K  +  LMR+ L+      QLT++H
Sbjct: 179 KRKLQSTERALKVAEEELMRLHLEATTKSKQLTEVH 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,479,585
Number of Sequences: 37544
Number of extensions: 263198
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)