Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30o14
         (302 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747...    28   1.6  
09_04_0537 + 18410201-18410207,18410301-18410586,18410674-184107...    27   2.8  
10_04_0020 + 7644329-7644666,7644960-7645146,7645311-7645365,764...    25   8.6  

>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
            7472855-7473019,7473689-7474821,7474902-7475426,
            7477077-7477249,7478737-7478831,7478893-7481688
          Length = 1693

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 86   GPSAGTDSRESALPARESQQTMQLIMQS 169
            G   G  S  SA+PA E + T+QL+ QS
Sbjct: 1203 GYENGHGSSRSAMPAEEQRNTLQLLNQS 1230


>09_04_0537 +
           18410201-18410207,18410301-18410586,18410674-18410773,
           18410881-18411147,18411286-18411363,18411444-18411545,
           18411628-18411677,18411793-18411889,18412248-18412361,
           18412495-18412666,18412865-18413217,18413812-18413898,
           18413981-18414001
          Length = 577

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +3

Query: 3   SIAARGVGNVIAIVGPIKISIFKTFILTGRRQGQIAVRAHCRRVNHSKQ 149
           ++  R + N + +VG + I I   F L   R+G +    H   V    Q
Sbjct: 434 TLTGRTLSNFVRVVGTLMIKILAVFSLFVSRRGNMLENVHPSNVEDEPQ 482


>10_04_0020 +
           7644329-7644666,7644960-7645146,7645311-7645365,
           7645390-7645438,7645984-7646200
          Length = 281

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 4   ALRHAASGMLSPLWGQ 51
           ALRHA SG    LWGQ
Sbjct: 126 ALRHAGSGKELGLWGQ 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,633,605
Number of Sequences: 37544
Number of extensions: 100654
Number of successful extensions: 258
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)