Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30o14
         (302 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54218-3|CAA90955.2|  654|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z49913-5|CAA90146.1|  404|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U28928-2|AAA68335.2|  329|Caenorhabditis elegans Hypothetical pr...    25   7.9  
AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine re...    25   7.9  

>Z54218-3|CAA90955.2|  654|Caenorhabditis elegans Hypothetical
           protein F37B12.2 protein.
          Length = 654

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -2

Query: 283 CCFIVCYCKVLLCFNITFLTKVT 215
           CCF+V   ++++ F +T+L  ++
Sbjct: 448 CCFVVLLTRMMISFRLTYLMPIS 470


>Z49913-5|CAA90146.1|  404|Caenorhabditis elegans Hypothetical
           protein ZK938.7 protein.
          Length = 404

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 292 TILCCFIVCYCKVLLCF 242
           T   CF+VCYC V+  F
Sbjct: 185 TFSSCFLVCYCVVVFTF 201


>U28928-2|AAA68335.2|  329|Caenorhabditis elegans Hypothetical
           protein C44B7.4 protein.
          Length = 329

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 115 LTAICPCRRPVNINVLKMEIFIGPTMAI 32
           LT  CPC  P+NI    +    GPT A+
Sbjct: 42  LTFSCPCAYPLNI-YHSLVFMFGPTAAL 68


>AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein45 protein.
          Length = 328

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 289 ILCCFIVCYCKVLLCFNITFLTKVTTA 209
           I+ C  +  C++L CF+ T+    TT+
Sbjct: 298 IILCLPIFRCRILKCFSKTYKNNRTTS 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,699,665
Number of Sequences: 27780
Number of extensions: 88615
Number of successful extensions: 249
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)