Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30o13
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-7|AAA96195.2|  342|Caenorhabditis elegans Lunapark (membr...    32   0.35 
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z83105-4|CAB05486.1|  280|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF022981-12|AAG24202.2|  306|Caenorhabditis elegans Tfii(two)b (...    28   7.4  

>U53338-7|AAA96195.2|  342|Caenorhabditis elegans Lunapark (membrane
           protein) homologprotein 1 protein.
          Length = 342

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 263 MRKQPNCIYFRICQYCHLEADVPSPDDHSVYRYLCVACGTL 141
           M   PNC    IC  CH    + +P ++    + C  CG L
Sbjct: 224 MSDGPNCRNALICSICHTHNGMSTPAEYPYISFRCFECGHL 264


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 142 CWLSTTRWTCLAKRRRASTNYLKCSASTPEGICSNT 35
           CW   TRW+   KR+    N+ K S     GI  ++
Sbjct: 887 CWEYCTRWSDFEKRKETIENFNKTSKIVKRGIAMSS 922


>Z83105-4|CAB05486.1|  280|Caenorhabditis elegans Hypothetical
           protein F14H3.4 protein.
          Length = 280

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 146 TLLVIDHPLDVFGETEEGVNELFEVQRINAGG 51
           +L V    L  F + EEG+NEL   +R N  G
Sbjct: 181 SLQVCRRRLGEFDDNEEGINELLNAERTNFDG 212


>AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical
           protein Y39A1B.2 protein.
          Length = 1003

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 319 FRLACKSTFRRTCPTPR*ICANNPIVYIFE 230
           F  A  S F     TP  IC +NP+V IF+
Sbjct: 153 FSKALHSLFAPNMTTPEEICVSNPLVEIFK 182


>AF022981-12|AAG24202.2|  306|Caenorhabditis elegans Tfii(two)b
           (general transcriptionfactor) protein 1 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -1

Query: 218 CHLEADVPSPDDHSVYRYLCVACGTLLVIDHPLDVFGETEEGVNE 84
           C +  DV   +DH     +C ACG L+V D  +DV  E     NE
Sbjct: 7   CPIHPDVHLIEDHRAGDLVCPACG-LVVGDRLVDVGTEWRSFSNE 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,320,963
Number of Sequences: 27780
Number of extensions: 319467
Number of successful extensions: 962
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)