Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30n21
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41007-2|AAA82265.1|  248|Caenorhabditis elegans Hypothetical pr...    32   0.23 
Z83123-8|CAB05613.2|  330|Caenorhabditis elegans Hypothetical pr...    31   0.41 
AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical...    31   0.72 
AF003142-5|ABQ13067.1|  474|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF003142-4|AAK73888.1|  856|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC006748-2|AAF60515.2|  215|Caenorhabditis elegans Hypothetical ...    29   1.7  
AL021487-11|CAA16355.2|  330|Caenorhabditis elegans Hypothetical...    29   2.2  
U23168-11|AAC38811.2|  454|Caenorhabditis elegans Hypothetical p...    28   5.0  
Z81134-3|CAB03446.1|  991|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z82068-1|CAB04897.1|  149|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U41007-2|AAA82265.1|  248|Caenorhabditis elegans Hypothetical
           protein C33H5.6 protein.
          Length = 248

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +3

Query: 291 NRTTVDILEFDTRMYIKP-GTHVYATNLFTSNPRKMMAFLYAEFGKVFKNKIFVNINNYG 467
           N TT+ +L    + Y++    H    N   +NP+    FL +      +        NYG
Sbjct: 89  NDTTIRLLHLQKKSYVRYFDGHRMPVNFIRTNPKDREKFLSSSVDGEIRMFDTRTFENYG 148

Query: 468 CVLAG 482
           C+LAG
Sbjct: 149 CLLAG 153


>Z83123-8|CAB05613.2|  330|Caenorhabditis elegans Hypothetical
           protein T04A11.10 protein.
          Length = 330

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 340 FMYMRVSNSKMSTVVRLHTNRNCGFTNLKMFVDVLPT 230
           F+Y ++ N K+S   +LH NRN  + N ++ + +  T
Sbjct: 225 FLYRKIRNLKVSARCQLHVNRNTNYQNAEVSLTLTAT 261


>AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical
           protein Y53F4B.21 protein.
          Length = 1099

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 66  YLFLTSYFDLKDNE-HVPSEPMAFIRNYLNCTFDLLDDAVLM 188
           YLFLT+   L D + H  +  +AFI N  NC   L  DA+ +
Sbjct: 96  YLFLTAEESLMDTDGHRINNLVAFIGNMYNCLLKLRSDALTL 137


>AF003142-5|ABQ13067.1|  474|Caenorhabditis elegans Hypothetical
           protein F57C9.4c protein.
          Length = 474

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 209 KHAVETFGGQHVDKHFQVCKATISICVQSHNCG-HFRI 319
           K   E F  +HVDK  + C+A  S   Q HN G H+R+
Sbjct: 350 KQMEEHFLNKHVDKEKKKCEACPSDQFQPHNIGQHYRL 387


>AF003142-4|AAK73888.1|  856|Caenorhabditis elegans Hypothetical
           protein F57C9.4b protein.
          Length = 856

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 209 KHAVETFGGQHVDKHFQVCKATISICVQSHNCG-HFRI 319
           K   E F  +HVDK  + C+A  S   Q HN G H+R+
Sbjct: 732 KQMEEHFLNKHVDKEKKKCEACPSDQFQPHNIGQHYRL 769


>AC006748-2|AAF60515.2|  215|Caenorhabditis elegans Hypothetical
           protein Y39A3B.3 protein.
          Length = 215

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 3   STQRK-MSGGGNLLTLERDHFKYLFLTSY 86
           ST+RK +  GGN   +  D+FKYL  ++Y
Sbjct: 110 STERKSLKNGGNTTVILYDNFKYLIFSNY 138


>AL021487-11|CAA16355.2|  330|Caenorhabditis elegans Hypothetical
           protein Y45F10B.4 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 340 FMYMRVSNSKMSTVVRLHTNRNCGFTNLKMFVDVLPT 230
           F+Y ++ N K+S   +LH NRN  +   ++ + +  T
Sbjct: 225 FLYRKIRNLKVSARCQLHVNRNTNYQKAEVSLTLTAT 261


>U23168-11|AAC38811.2|  454|Caenorhabditis elegans Hypothetical
           protein B0228.8 protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 333 YIKPGTHVYATNLFTSNPRKMMAFLYAEFGKV--FKNKIFVNINNYG 467
           YI P T V+  ++   N  + + + Y  FGKV  +   +F +I+N G
Sbjct: 234 YITPATKVFICDVGKMNGNQFVEYWYKRFGKVQTYSEHVF-DISNNG 279


>Z81134-3|CAB03446.1|  991|Caenorhabditis elegans Hypothetical
           protein T28D6.4 protein.
          Length = 991

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 188 ELFQLLAKHAVETFGGQHVDKHFQVCKAT-ISICVQSHNCGH 310
           E FQ      +E  G +H  K +   K + +S CV SH C H
Sbjct: 28  EWFQQANSRRLEIIGKEHSGKTWFARKLSEVSECVASHFCSH 69


>Z82068-1|CAB04897.1|  149|Caenorhabditis elegans Hypothetical
           protein W04A4.3 protein.
          Length = 149

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 397 WLSCTLNLARCLRIKYSXXXXXXAAC*RAVPVFCSTTRTWIGMVCECVR 543
           WL C LN  +C   KYS           AV + C   + W G   +C++
Sbjct: 97  WLECQLNKLQCCTKKYSRNVTDFEIL--AV-LECIQGKQWFGKALDCLQ 142


>Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical
           protein F55B12.6 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 330 MYIKPGTHVY--ATNLFTSNPRKMMAFLYAEFGKVFKNKIFVNINNYGCVLAG 482
           MY+  GT++   A NL +    K +  LYA +  +    +F  I+NY   L G
Sbjct: 279 MYLPVGTYMTLPALNLDSEEFSKFVTLLYAIYPAIDPLPLFFVIDNYRIALKG 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,369,827
Number of Sequences: 27780
Number of extensions: 283071
Number of successful extensions: 622
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)