Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30n09
(352 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 97 5e-22
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 91 6e-20
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 61 6e-11
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 58 4e-10
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 58 5e-10
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 56 2e-09
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 56 2e-09
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 54 9e-09
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 52 2e-08
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 52 3e-08
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 51 6e-08
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 50 8e-08
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 50 8e-08
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 50 1e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 48 4e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 1e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 46 2e-06
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 45 3e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 45 3e-06
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 45 4e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 44 5e-06
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 44 7e-06
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 44 9e-06
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 42 4e-05
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 40 9e-05
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 40 1e-04
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 39 2e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 39 3e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 3e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 38 3e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 37 8e-04
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 37 0.001
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.001
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.003
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.004
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 34 0.006
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 34 0.006
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 33 0.010
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 33 0.013
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 33 0.017
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.16
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 29 0.21
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 29 0.21
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 2.6
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ... 25 3.4
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 3.4
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 4.5
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po... 25 4.5
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 24 6.0
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 24 7.9
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 24 7.9
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 24 7.9
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 24 7.9
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 97.5 bits (232), Expect = 5e-22
Identities = 43/66 (65%), Positives = 51/66 (77%)
Frame = +3
Query: 150 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRNL 329
V+VGNIPYE EE++ DIF + GPV SF+LV D E+G+PKGYGFCEY D TA SA RNL
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 330 NGYEIG 347
N Y+ G
Sbjct: 67 NNYDAG 72
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 90.6 bits (215), Expect = 6e-20
Identities = 39/66 (59%), Positives = 50/66 (75%)
Frame = +3
Query: 150 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRNL 329
VFVGNIPY+ +E+++ +IF++VGPV +FKLV D ETG KGYGFCE+ D ET A R L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 330 NGYEIG 347
N E+G
Sbjct: 69 NNSELG 74
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 60.9 bits (141), Expect = 6e-11
Identities = 22/67 (32%), Positives = 45/67 (67%)
Frame = +3
Query: 150 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRNL 329
++VGN+P+ ++ L D+F+++G V+ ++ ++ TG+ KG+G +++++ A S+ L
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENENDAASSIEKL 340
Query: 330 NGYEIGG 350
NGY GG
Sbjct: 341 NGYRYGG 347
Score = 40.7 bits (91), Expect = 6e-05
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +3
Query: 144 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXR 323
R V+VGN+ Y+ +LK+ +VG VL+ + + + G KG EY E A +A +
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCE-ILNLPNGLSKGCAIIEYSTAEEARTAIK 124
Query: 324 NLNGYEIGG 350
L+ + G
Sbjct: 125 TLSNQKFMG 133
Score = 32.7 bits (71), Expect = 0.017
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 165 IPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRNLNGYEI 344
+PY + LKD+F + G V+ + ++E G+ +G G + A+ A + L+ +
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQMLHNTDF 248
Query: 345 GG 350
G
Sbjct: 249 MG 250
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 58.0 bits (134), Expect = 4e-10
Identities = 29/78 (37%), Positives = 52/78 (66%)
Frame = +3
Query: 84 IIKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGK 263
II ++ +EEQ +K+ + +FVG +P + TEE+ ++ F++ G VL L+ D++TG+
Sbjct: 231 IIDPKRAIPREEQ---EKTAK-MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGR 286
Query: 264 PKGYGFCEYKDQETALSA 317
P+G+GF Y + E+A+ A
Sbjct: 287 PRGFGFVTY-ENESAVEA 303
Score = 49.6 bits (113), Expect = 1e-07
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +3
Query: 114 EEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYK 293
EE S ++ +F+G + +E T++ L+D F + G VL ++ D TG+ +G+GF +K
Sbjct: 153 EETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
Query: 294 D 296
+
Sbjct: 213 N 213
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 57.6 bits (133), Expect = 5e-10
Identities = 22/65 (33%), Positives = 41/65 (63%)
Frame = +3
Query: 150 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRNL 329
+++GN+ ++ E+ + +FSE G + LV D+ETGK KG+ F +Y+DQ + + A N+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 330 NGYEI 344
++
Sbjct: 93 TNVKL 97
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 56.0 bits (129), Expect = 2e-09
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Frame = +3
Query: 81 TIIKMDKSKEKEEQSIM--DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRE 254
T+++ + E+ +++ D + +FVGN+ + +E L FSE ++ K+V DRE
Sbjct: 7 TVVRKAGGQVWEDPTLLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE 66
Query: 255 TGKPKGYGFCEYKDQETALSAXRNLNGYEIG 347
GK +G+GF +KD + L A R NG IG
Sbjct: 67 -GKTRGFGFVSFKDSDQFLKAWREKNGKYIG 96
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 55.6 bits (128), Expect = 2e-09
Identities = 26/72 (36%), Positives = 42/72 (58%)
Frame = +3
Query: 102 SKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 281
SK QS + +FVGN+ +E T+ LK+ F +VG + +L+ +TGK KG+GF
Sbjct: 214 SKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGF 273
Query: 282 CEYKDQETALSA 317
++ D +T + A
Sbjct: 274 VDFPDIDTCMKA 285
Score = 29.1 bits (62), Expect = 0.21
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 90 KMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIF 206
K + +E E Q +S ++VGN+ + T+E L D F
Sbjct: 87 KYGRKEEGESQEESKRSPWGIWVGNLSFHTTKEILTDFF 125
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 53.6 bits (123), Expect = 9e-09
Identities = 25/86 (29%), Positives = 45/86 (52%)
Frame = +3
Query: 93 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKG 272
+ + + + + + + +V++ N+ E TE++ D+F + G + S LV D + KP+G
Sbjct: 244 VSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRG 302
Query: 273 YGFCEYKDQETALSAXRNLNGYEIGG 350
+GF Y + E A A LN E G
Sbjct: 303 FGFVNYANHECAQKAVDELNDKEYKG 328
Score = 47.6 bits (108), Expect = 6e-07
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +3
Query: 111 KEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY 290
+ + S+ +VF+ N+ + L D FS G +LS K+ D E G KGYGF +
Sbjct: 157 QRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHF 215
Query: 291 KDQETALSAXRNLNG 335
E+A +A ++NG
Sbjct: 216 DSVESANAAIEHVNG 230
Score = 41.5 bits (93), Expect = 4e-05
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +3
Query: 147 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRN 326
S++VG + TE L ++F+ +GPV S ++ D T + GY + + + E A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 327 LN 332
LN
Sbjct: 141 LN 142
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 52.4 bits (120), Expect = 2e-08
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +3
Query: 156 VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRNLNG 335
V N+ + EE+L+D+F G + L D+ETG+ KG+ F Y D++ A+ A L+G
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
Query: 336 Y 338
Y
Sbjct: 266 Y 266
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 51.6 bits (118), Expect = 3e-08
Identities = 24/68 (35%), Positives = 40/68 (58%)
Frame = +3
Query: 147 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRN 326
+VFVGN+ + ATE+ L F G + S +L D ++G+ KG+G+ + D ++A
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-E 425
Query: 327 LNGYEIGG 350
+NG+ I G
Sbjct: 426 MNGHFIAG 433
Score = 46.4 bits (105), Expect = 1e-06
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +3
Query: 147 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRN 326
+VFVG + + ++ L F E G ++ +++ D ++G+ KGYG+ +++ E A +A
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 327 LNGYEIGG 350
EI G
Sbjct: 324 NGTKEIDG 331
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 50.8 bits (116), Expect = 6e-08
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +3
Query: 150 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRNL 329
+ V + EATEE+++D+F++ GPV + L DR TG KGY EY E A A
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 330 N 332
N
Sbjct: 72 N 72
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 50.4 bits (115), Expect = 8e-08
Identities = 23/88 (26%), Positives = 47/88 (53%)
Frame = +3
Query: 87 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 266
+ +S + + ++D S +++ N+P E+++ ++ G +LSF+L+ + G
Sbjct: 292 VSQKRSDDYAKNDVLD-SKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSS 350
Query: 267 KGYGFCEYKDQETALSAXRNLNGYEIGG 350
KG+ FCE+K+ A A L+G + G
Sbjct: 351 KGFCFCEFKNPSDAEVAISGLDGKDTYG 378
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 50.4 bits (115), Expect = 8e-08
Identities = 23/82 (28%), Positives = 44/82 (53%)
Frame = +3
Query: 105 KEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFC 284
K+ E + K ++VG +P+ E++++ FS+ GPVL ++ +R+TG K Y F
Sbjct: 92 KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151
Query: 285 EYKDQETALSAXRNLNGYEIGG 350
E++ + A ++ Y + G
Sbjct: 152 EFESLDVANVVAETMHNYLLYG 173
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 49.6 bits (113), Expect = 1e-07
Identities = 23/71 (32%), Positives = 41/71 (57%)
Frame = +3
Query: 138 SMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSA 317
S ++FV N+ ++ ++ L + FS+VGP+ +V + ETG+ +GYGF + E A A
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 318 XRNLNGYEIGG 350
+ L ++ G
Sbjct: 63 AKELKNKKLHG 73
Score = 40.7 bits (91), Expect = 6e-05
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +3
Query: 147 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYK 293
+VFV N+ +E TE++L + F + GP+ KLV D T + G GF +++
Sbjct: 278 TVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 36.3 bits (80), Expect = 0.001
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +3
Query: 87 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATE-EKLKDIFSEVGPVLSFKLVFDRETGK 263
+ D++K ++ D R + + N+P+ + + L+ FS+ G V K+ + G+
Sbjct: 89 VDTDQNKAVKKTIRQDNRPRLI-IRNLPWSIKKPQHLEPHFSKFGKVREIKIP-TKGGGR 146
Query: 264 PKGYGFCEYKDQETALSAXRNLNGYEIGG 350
G+ F KD++ A A +LNG EI G
Sbjct: 147 MCGFAFVWMKDRKAAEEAMNSLNGTEIDG 175
Score = 31.1 bits (67), Expect = 0.052
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 258 GKPKGYGFCEYKDQETALSAXRNLNGYEI 344
G+ KG+GF ++ + AL A R LNG EI
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGREI 564
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 48.0 bits (109), Expect = 4e-07
Identities = 23/64 (35%), Positives = 37/64 (57%)
Frame = +3
Query: 144 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXR 323
+SV+VGN+ Y T E+L+ F+ G V ++ D+ TG PKG+ + E+ + +A
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114
Query: 324 NLNG 335
LNG
Sbjct: 115 -LNG 117
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 46.4 bits (105), Expect = 1e-06
Identities = 25/86 (29%), Positives = 41/86 (47%)
Frame = +3
Query: 93 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKG 272
+DK + + + +FV I E++L+ IFS+ G V +++ + T +G
Sbjct: 84 LDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRG 143
Query: 273 YGFCEYKDQETALSAXRNLNGYEIGG 350
+GF + E A SA NLN E G
Sbjct: 144 FGFLSFSTVEEATSAIDNLNSQEFYG 169
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 45.6 bits (103), Expect = 2e-06
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +3
Query: 90 KMDKSKEKEEQSIM---DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETG 260
K +S+ +E S + ++ R+VFV + T +L D F + GPV ++V D+ +G
Sbjct: 219 KRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISG 278
Query: 261 KPKGYGFCEYKDQETALSA 317
+ KG + E+ +++ +A
Sbjct: 279 RSKGVAYVEFCHEDSVQAA 297
Score = 43.6 bits (98), Expect = 9e-06
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +3
Query: 156 VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRNLNG 335
V NI + T+E +K IF G + L D + + KG+G+ +Y++ +A +A +NG
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNG 402
Query: 336 YEIGG 350
+++ G
Sbjct: 403 FDLAG 407
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 45.2 bits (102), Expect = 3e-06
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +3
Query: 135 KSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALS 314
K V+VGN+ + TEE++ +FS+ G + + DR T P G+ F EY + + AL
Sbjct: 29 KQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALD 88
Query: 315 AXRNLN 332
+ + ++
Sbjct: 89 SLKYIS 94
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 45.2 bits (102), Expect = 3e-06
Identities = 24/62 (38%), Positives = 33/62 (53%)
Frame = +3
Query: 147 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRN 326
++FVGN+ E L D FS +G ++ V E G+ KGYGF Y ETA +A
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159
Query: 327 LN 332
+N
Sbjct: 160 MN 161
Score = 42.3 bits (95), Expect = 2e-05
Identities = 18/68 (26%), Positives = 38/68 (55%)
Frame = +3
Query: 147 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRN 326
++++GN+ + T+ L ++ + GPV++ + DR G+GFCE+ ++ A +
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71
Query: 327 LNGYEIGG 350
LN ++ G
Sbjct: 72 LNQVKLFG 79
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.8 bits (101), Expect = 4e-06
Identities = 25/65 (38%), Positives = 39/65 (60%)
Frame = +3
Query: 156 VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRNLNG 335
VGN+ ++ TE L D F E V S +LV D T + +G+G+ E++ +T LSA L+G
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADT-LSAALALSG 154
Query: 336 YEIGG 350
++ G
Sbjct: 155 EDLMG 159
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 44.4 bits (100), Expect = 5e-06
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +3
Query: 144 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 296
R VFVGN+ +EA EE L F + G + ++V D +T KG+ + ++KD
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320
Score = 23.8 bits (49), Expect = 7.9
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +3
Query: 87 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEK--LKDI---FSEVGPVLSFK 236
+K ++ ++ + ++KS ++VFV N+P K KD+ F + G V S +
Sbjct: 145 VKSEREVAEKLANELEKSDKTVFVNNLPARVVTNKGDYKDLTKHFRQFGAVDSIR 199
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 44.0 bits (99), Expect = 7e-06
Identities = 21/67 (31%), Positives = 38/67 (56%)
Frame = +3
Query: 105 KEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFC 284
K K ++ + +FVGN+P +++ E L+ F G V S ++ D+ +G+ KGY F
Sbjct: 79 KSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFV 138
Query: 285 EYKDQET 305
E+ + +T
Sbjct: 139 EFINPKT 145
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 43.6 bits (98), Expect = 9e-06
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 183 EEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRNLNGYEIG 347
+ +L+D+FS G +LS L +G KGYGF ++ E A+ A LNG +G
Sbjct: 397 KSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVG 451
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 41.5 bits (93), Expect = 4e-05
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +3
Query: 144 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 311
R+V++ +P ++E L + G V S K + D ET KGYGF ++++++AL
Sbjct: 296 RNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSAL 351
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 40.3 bits (90), Expect = 9e-05
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +3
Query: 147 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRN 326
++ V NIP+ ++ L D F ++G + + + G +G F + E A +
Sbjct: 203 AIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQT 262
Query: 327 LNGYEIGG 350
LNGYEI G
Sbjct: 263 LNGYEING 270
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 39.5 bits (88), Expect = 1e-04
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 123 SIMDKSMRSV-FVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQ 299
S +++ + S+ F+ N+ ++ T E++ D+F GPV +L T + +G F Y++
Sbjct: 4 STVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYENV 60
Query: 300 ETALSAXRNLNGY 338
+ A A L+GY
Sbjct: 61 QDARRACEKLSGY 73
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 39.1 bits (87), Expect = 2e-04
Identities = 23/67 (34%), Positives = 31/67 (46%)
Frame = +3
Query: 150 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRNL 329
+FVG IP +AT E + D F G +L KL+ G+GF E +D A +
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVNDF 57
Query: 330 NGYEIGG 350
G E G
Sbjct: 58 QGKEFMG 64
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 38.7 bits (86), Expect = 3e-04
Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Frame = +3
Query: 87 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 266
++ S++ + I +++V N+ + +E+ + +F + LS + + +P
Sbjct: 600 VEATTSEKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRP 659
Query: 267 -----KGYGFCEYKDQETALSAXRNLNGYEIGG 350
G+GF E+KD+ +A++A +NG+ + G
Sbjct: 660 GKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDG 692
Score = 35.5 bits (78), Expect = 0.002
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +3
Query: 93 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKL--VFDRETGKP 266
+D + E +Q + + N+P+EAT++ ++ + G + S ++ FDR
Sbjct: 704 VDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSA--- 760
Query: 267 KGYGFCEYKDQETALSAXRNLNGYEIGG 350
+G+ F E+ A +A R L + G
Sbjct: 761 RGFAFAEFVTAREAANAMRALKNTHLLG 788
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 38.7 bits (86), Expect = 3e-04
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +3
Query: 129 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA 308
M++ +V VGN+ TE L + F G ++S L +E + Y F E+ + E A
Sbjct: 1 MERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVAL-HRKEKAVDRSYAFVEFDEPEDA 59
Query: 309 LSAXRNLN 332
A N+N
Sbjct: 60 KEAMENMN 67
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 38.3 bits (85), Expect = 3e-04
Identities = 16/78 (20%), Positives = 39/78 (50%)
Frame = +3
Query: 117 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 296
++ ++ +++F+ + Y+ E ++ F+ GP+ ++V ++ TGK GY F ++
Sbjct: 91 DRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFER 150
Query: 297 QETALSAXRNLNGYEIGG 350
+ A + G + G
Sbjct: 151 ERDLKVAYKASAGLMLNG 168
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 37.1 bits (82), Expect = 8e-04
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +3
Query: 150 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSA 317
+FV + +E L+ IFS G ++S +++ D+ETG Y F E+ ++E+ A
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 36.7 bits (81), Expect = 0.001
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +3
Query: 147 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRN 326
++ + NIP+ +E L +F+ + + + + G +G F + E A + +
Sbjct: 233 AIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQV 292
Query: 327 LNGYEIGG 350
LNGYEI G
Sbjct: 293 LNGYEITG 300
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 36.3 bits (80), Expect = 0.001
Identities = 18/73 (24%), Positives = 37/73 (50%)
Frame = +3
Query: 132 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 311
++ +R++ V N+ T+E + +IF G + + +++ KGY + EY + A
Sbjct: 95 EEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAA 154
Query: 312 SAXRNLNGYEIGG 350
+A +N E+ G
Sbjct: 155 NAVDKMNNAELDG 167
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.1 bits (77), Expect = 0.003
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Frame = +3
Query: 84 IIKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDR---- 251
+I ++K EK ++S K S++VGN+P L ++F G F ++ +
Sbjct: 1 MIALEKLSEKNKRSTK-KCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKS 59
Query: 252 -ETGKPKGYGFCEYKDQETALSAXRNLNGYEIGG 350
++ P + F ++++ +A +A +LNG G
Sbjct: 60 TDSKSPTLFAFITFENKCSADNAIASLNGSSFQG 93
Score = 34.7 bits (76), Expect = 0.004
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 186 EKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRNLNGYEIG 347
++L+++FS+ G + S L T KGYGF + A+ A LNG G
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFG 488
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.7 bits (76), Expect = 0.004
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +3
Query: 147 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXRN 326
++++G + TE ++ +++ +G + KL+ +R TG GY F E+ A SA +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA-MS 152
Query: 327 LNGYEIGG 350
+N I G
Sbjct: 153 MNNKPIPG 160
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 34.3 bits (75), Expect = 0.006
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 144 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXR 323
R +F+GNIP E + + I G + S++ V D + +GF E++ E A
Sbjct: 139 RMLFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSM-TSFGFAEFESNEQFSRALE 197
Query: 324 NLNGYEI 344
LN + +
Sbjct: 198 ALNDFVV 204
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.3 bits (75), Expect = 0.006
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 144 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDR 251
R+VF+GN+P TE+++++ GP+ K+V +R
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 33.5 bits (73), Expect = 0.010
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 147 SVFVGNIPYEATEEKLKDIFSEVGP-VLSFKLVFDRETGKPKGYGFCEYKDQETALSAXR 323
S+FVG++ + L F + P S K++ D TG + YGF + ++ A
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 324 NLNGY 338
++ GY
Sbjct: 243 HMQGY 247
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 33.1 bits (72), Expect = 0.013
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 147 SVFVGNIPYEATEEKLKDIFS-EVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAXR 323
+++VGN+P +EE+LK +FS +VG +K + R G F E+++ A+ A +
Sbjct: 427 TIYVGNLPPSTSEEELKVLFSTQVG----YKRLCFRTKGNGP-MCFVEFENIPYAMEALK 481
Query: 324 NLNG 335
NL G
Sbjct: 482 NLQG 485
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 32.7 bits (71), Expect = 0.017
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +3
Query: 150 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDR-ETGK---PKGYGFCEYKDQETALSA 317
VFVG + + +++ +F VG V + F R G P G F + +QE A
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKA 105
Query: 318 XRNLNG 335
LNG
Sbjct: 106 IETLNG 111
Score = 27.1 bits (57), Expect = 0.85
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Frame = +3
Query: 147 SVFVGNIPYEATEEKLKDIFSEVGPV------------LSFKLVFDRETGKPKGYGFCEY 290
S++V + T E LK++F P + ++ E + +G+GF +
Sbjct: 206 SIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSF 265
Query: 291 KDQETALSAXRNLNGYEIG 347
+ E A +NG ++G
Sbjct: 266 ANAEDQSRAIEEMNGKQVG 284
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.5 bits (63), Expect = 0.16
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +3
Query: 144 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLV 242
R+VF+GN+P E+++++ F + G + K++
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL 331
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 29.1 bits (62), Expect = 0.21
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +3
Query: 123 SIMDKSMRSVFVGNIPYEATEEKL----KDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY 290
S+ K + +FV ++ +EE+L KD F + GP+L K++ D + Y F ++
Sbjct: 72 SVRGKPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQF 128
Query: 291 KDQETALSA 317
++ + A A
Sbjct: 129 QNTDDASKA 137
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 29.1 bits (62), Expect = 0.21
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +3
Query: 147 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETG 260
SVFV NIP E ++ LK S GPV + + F R G
Sbjct: 316 SVFVKNIPPETSDVSLKSAMSIFGPVKAIE--FARRKG 351
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.4 bits (53), Expect = 2.6
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -1
Query: 277 P*PLGLPVSRSKTSLKDKTGPTSLNMSFNFSSVASYGILP 158
P P LPV KTSL + P S+N+ N +SVA G++P
Sbjct: 908 PPPPPLPV---KTSLNTFSHPDSVNIVANDTSVA--GVMP 942
>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 268
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 108 EKEEQSIMDKSMRSVFVGNIPYEATEEK 191
EK +Q IMD + ++ F G I + E K
Sbjct: 163 EKSQQMIMDTARKAGFAGGIVVDHPESK 190
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 114 EEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEV 215
E+++ M+ +F G+IP + E K FS+V
Sbjct: 588 EDRAASSNEMQLLFEGSIPILTSYENYKQSFSDV 621
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 24.6 bits (51), Expect = 4.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 293 FIFTKPITFGFTGFAIEDKFERQDGSYFTEYVL*FLFC 180
+ F K + F F I D+FE D S ++V F +C
Sbjct: 1039 YSFGKYLEFMFYNSQIRDRFEFCDHSVMAQHVHYFGYC 1076
>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 235
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/48 (18%), Positives = 22/48 (45%)
Frame = -3
Query: 242 DKFERQDGSYFTEYVL*FLFCRFVWYITHENRSHGFIHDALFLFFFTF 99
+++ R+D S+ + + +W + + N G++ F+ F F
Sbjct: 48 NRYGREDFSFIVLFSCMIVISALLWALFYMNTPKGYVTTITFMLFVDF 95
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 24.2 bits (50), Expect = 6.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 334 PLRFLXALKAVSWSLYSQN 278
PL+ + LKA+ W L+S N
Sbjct: 354 PLKAVNVLKAIRWMLWSWN 372
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 23.8 bits (49), Expect = 7.9
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -3
Query: 230 RQDGSYFTEYVL*FLFCRFVWYITHENRSHGFIHDALFLFFFTFIHLYNCMLIPI*III 54
R D + E V F + VW T DA +LF +T++ L+N + + +I+
Sbjct: 1060 RWDYNRVAEMVNNFFYKSVVWTFTLFWYQIYNNFDANYLFDYTYVMLFNLIFSSLPVIV 1118
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 102 SKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPV 224
+ ++ I + R +FV N+P L ++FS++G V
Sbjct: 181 NSNSDDIDIFSHASRYLFVTNLPRIVPYATLLELFSKLGDV 221
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 23.8 bits (49), Expect = 7.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 292 LYSQNP*PLGLPVSRSKTSLKDKTGPTSLNMSFNFSSVASY 170
+YS N PLG V+ T + PT++ ++F+ + V Y
Sbjct: 133 IYSMNDTPLGFGVTARSTLELRRLEPTAI-VAFHQADVGEY 172
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 218 SYFTEYVL*FLFCRFVWYITHENRSHGFIHD 126
++F ++ ++F F+ HE+ GF+HD
Sbjct: 122 AFFFGGIVFYIFNHFLHKWLHESSQTGFLHD 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,673
Number of Sequences: 5004
Number of extensions: 24823
Number of successful extensions: 155
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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