Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30n09
         (352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   7.4  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    20   9.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 170 WYITHENRSHGFIHDALFLFFFTFIHLYNCML 75
           W I H + S   I     L F T +  YN +L
Sbjct: 208 WEIVHMSHSESTIDSKFGLGFTTDLLSYNILL 239


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 214  TSLNMSFNFSSVASYG 167
            +S N S+NFSSV+  G
Sbjct: 1050 SSSNPSYNFSSVSGDG 1065


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 214  TSLNMSFNFSSVASYG 167
            +S N S+NFSSV+  G
Sbjct: 1046 SSSNPSYNFSSVSGDG 1061


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 152 NRSHGFIHDA 123
           NR+HGF +DA
Sbjct: 228 NRTHGFPNDA 237


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 123 SIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVL 227
           ++  +    +F G  PY      ++D  S  GPVL
Sbjct: 16  TVSSQDYSQLFAGFGPYIRQAVAMRDPRSNRGPVL 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,518
Number of Sequences: 438
Number of extensions: 1787
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)