Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30n06
         (228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   2.4  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    24   2.4  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    24   3.1  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    23   4.1  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    23   5.4  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    22   9.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    22   9.5  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 161 IMTDLVQFVYFNKI*YFNWEK 223
           ++ +++  +Y NKI YF+W+K
Sbjct: 654 LVRNVLLSIYENKIIYFDWKK 674


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 115 YVEDFRLIYNAYKLNKSIRAGFNEHDSS 32
           Y ED RL++    +NK + A  + H+ +
Sbjct: 776 YYEDARLVFRELAMNKGLVAKVDGHEGN 803


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 147 GKNKEWYISIFMLKISDSFIMHIN 76
           G   +WYIS+F   I  S I+ IN
Sbjct: 340 GIKTDWYISVFRYLILFSSIIPIN 363


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -3

Query: 145 QKQGMVYFNFYVEDFRLIYNAYKLNKSIRAGFNEHDSSCSF 23
           ++Q + + N    + R   + Y L K I  G N   + C F
Sbjct: 257 KQQDLFFGNLGASNLRYCLSQYILMKGIGIGINIRHTRCEF 297


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 112 VEDFRLIYNAYKLNKS 65
           V D+ L+Y  Y LNK+
Sbjct: 851 VSDYTLLYQPYSLNKN 866


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 72  TNQLGQASMNTTAAVPSFGIFMSS 1
           T   G  + NT++  PS G+F S+
Sbjct: 34  TGLFGNTNNNTSSTAPSGGLFGSN 57


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 91  YNAYKLNKSIRAGFNEH 41
           YN Y+L + +R G +EH
Sbjct: 389 YNIYQLQELVRNGPDEH 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 893,270
Number of Sequences: 5004
Number of extensions: 15222
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)