Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30n06
         (228 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0346 + 23335753-23335854,23336268-23336473,23336530-233367...    27   1.6  
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613...    27   1.6  
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611...    27   1.6  
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232...    27   2.8  
03_05_0345 + 23325842-23325964,23326384-23326828,23326965-233271...    26   3.7  

>03_05_0346 +
           23335753-23335854,23336268-23336473,23336530-23336705,
           23336832-23337064,23337546-23337963,23338045-23338262,
           23338905-23339168
          Length = 538

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 177 TKSVIIYKQEGKNKEWYISIFMLKISDSFIMH 82
           T   I  K  GKN++W+   ++ K    +I+H
Sbjct: 253 TSQTITLKWHGKNRKWHPKFYIRKDQVGYILH 284


>02_02_0017 -
           6131265-6131284,6131654-6131774,6132011-6132146,
           6132423-6132529,6133006-6133099,6133199-6133395,
           6134401-6134472,6135128-6135304,6135393-6135467,
           6135557-6135697,6136439-6136627,6136969-6137034,
           6137118-6137268,6137596-6137664,6138751-6138899,
           6138969-6139100,6139198-6139523,6139599-6139635,
           6139765-6139803,6140196-6140250,6140363-6140424,
           6140512-6140532,6140820-6140822
          Length = 812

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = -1

Query: 177 TKSVIIYKQEGKNKEWYISIFMLKISDSFIMHIN*TNQLGQASMNTTAAVPS 22
           TK   + K++GKN   ++  FML   +  +  +  +N++ +A++ + + +PS
Sbjct: 619 TKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPS 670


>02_02_0016 -
           6118739-6118758,6119116-6119236,6119478-6119613,
           6119887-6119993,6120316-6120409,6120509-6120705,
           6121872-6121943,6122597-6122773,6122862-6122936,
           6123027-6123167,6123837-6124025,6124415-6124480,
           6124564-6124714,6125040-6125200,6126279-6126410,
           6126508-6126833,6126906-6126942,6127056-6127088,
           6127500-6127554,6127666-6127753,6127817-6127862
          Length = 807

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = -1

Query: 177 TKSVIIYKQEGKNKEWYISIFMLKISDSFIMHIN*TNQLGQASMNTTAAVPS 22
           TK   + K++GKN   ++  FML   +  +  +  +N++ +A++ + + +PS
Sbjct: 614 TKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPS 665


>06_01_0320 -
           2320317-2320336,2320791-2320902,2321092-2321236,
           2321353-2321459,2321572-2321665,2321752-2321948,
           2322311-2322382,2322504-2322618,2323060-2323176,
           2323253-2323344,2323445-2323621,2323746-2323820,
           2323911-2324051,2324671-2324859,2325298-2325363,
           2325445-2325595,2325718-2325786,2326293-2326441,
           2326526-2326657,2326756-2327081,2327167-2327203,
           2327926-2327980,2328242-2328309,2328464-2328466
          Length = 902

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = -1

Query: 156 KQEGKNKEWYISIFML-KISDSFIMHIN*TNQLGQASMNTTAAVPS 22
           K+ GKN   ++ +FML K+ D   + I+ +N++ +A++   + +PS
Sbjct: 716 KEHGKNNVAFLCLFMLGKLEDCIQLLID-SNRIPEAALMARSYLPS 760


>03_05_0345 +
           23325842-23325964,23326384-23326828,23326965-23327188,
           23327665-23328171,23328482-23328742
          Length = 519

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -1

Query: 165 IIYKQEGKNKEWYISIFMLKISDSFIMH 82
           I  +++GKNK+WY   ++ K    ++++
Sbjct: 282 ITLQRQGKNKKWYPMFYIRKDGSGYMLY 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,037,720
Number of Sequences: 37544
Number of extensions: 76158
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 268085412
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)