Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30n06
         (228 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88314-9|AAF99881.1|  408|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z77655-3|CAB01134.1|  426|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U41533-1|AAA83162.2|  357|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U97552-2|AAB52862.1|  141|Caenorhabditis elegans Human sedl (spo...    25   9.6  

>U88314-9|AAF99881.1|  408|Caenorhabditis elegans Hypothetical
           protein C46H11.2 protein.
          Length = 408

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 139 QGM-VYFNFYVEDFRLIYNAYKLNKSIRAGFNEHDSSCSFVWHIH 8
           QGM ++FN  VE+   I + +K+     AG +EH     FV + H
Sbjct: 95  QGMPIHFNQTVENVERIDDKWKVTTHHGAGIDEHFFDIVFVCNGH 139


>Z77655-3|CAB01134.1|  426|Caenorhabditis elegans Hypothetical
           protein C56A3.3 protein.
          Length = 426

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 100 RLIYNAYKLNKSIRAGFNEHDSSCSFVW 17
           +LI  +  LN+S +A F E +S+ S +W
Sbjct: 368 KLILPSLDLNRSDQASFAESESAASPIW 395


>U41533-1|AAA83162.2|  357|Caenorhabditis elegans Hypothetical
           protein R05F9.7 protein.
          Length = 357

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 7/15 (46%), Positives = 14/15 (93%)
 Frame = -3

Query: 133 MVYFNFYVEDFRLIY 89
           MVYFN++V+ F++++
Sbjct: 65  MVYFNYFVKSFQIVH 79


>U97552-2|AAB52862.1|  141|Caenorhabditis elegans Human sedl
           (spondyloepiphysealdysplasia tarda) related protein 1
           protein.
          Length = 141

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 177 TKSVIIYKQEGKNKEWYISIFMLKISDSFIM 85
           T S +  K   K  EWY+S F+      FIM
Sbjct: 57  TTSQMYLKMVDKFNEWYVSAFVTASRIRFIM 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,828,144
Number of Sequences: 27780
Number of extensions: 81401
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 12,740,198
effective HSP length: 55
effective length of database: 11,212,298
effective search space used: 224245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)