Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30n04
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 212 1e-55
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 171 2e-43
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 126 1e-29
Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical pr... 31 0.78
AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical ... 29 2.4
Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 27 7.3
Z83246-1|CAB05842.2| 312|Caenorhabditis elegans Hypothetical pr... 27 9.6
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 212 bits (518), Expect = 1e-55
Identities = 101/176 (57%), Positives = 124/176 (70%)
Frame = +3
Query: 51 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 230
SKVSR++L E + VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP
Sbjct: 2 SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61
Query: 231 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 410
M+VCV GDQ H DEA ++P M SESLIKQIPR
Sbjct: 62 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 121
Query: 411 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 578
+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 122 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 177
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 171 bits (417), Expect = 2e-43
Identities = 80/140 (57%), Positives = 97/140 (69%)
Frame = +3
Query: 159 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 338
KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA ++P M
Sbjct: 8 KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67
Query: 339 XXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 518
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQ
Sbjct: 68 LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 127
Query: 519 MKKVLCLSVAVGHVDMTPDE 578
MKKVLCLSVAVGHV +T +E
Sbjct: 128 MKKVLCLSVAVGHVGLTQEE 147
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 126 bits (304), Expect = 1e-29
Identities = 61/116 (52%), Positives = 74/116 (63%)
Frame = +3
Query: 231 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 410
M+VCV GDQ H DEA ++P M SESLIKQIPR
Sbjct: 1 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60
Query: 411 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 578
+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 61 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 116
>Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical
protein R10E8.3 protein.
Length = 522
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 545 YRKTQHLLHLELNGS--LDFINLLRHGLLVGEKTREFTSFVQTGTQQTGN 402
+R + HLEL GS L+FI LL L +K R+ T F G GN
Sbjct: 348 FRNKISMAHLELKGSSELEFIQLL--DCLDAKKLRKLTIFATVGDVNNGN 395
>AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical
protein E02H9.4 protein.
Length = 118
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 108 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 218
K +K N E VEL +KNY P+ + R V+ KY+
Sbjct: 41 KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77
>Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical
protein R04D3.3 protein.
Length = 430
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 21 IGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 188
+GGS + + +D+L E ++ + +S K K LET+ Q G K D +R
Sbjct: 189 VGGSSMEDVLTSDEKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHSRRR 243
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 393 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 512
I +IP G GLN A ++ L ++M +K+++ +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181
>Z83246-1|CAB05842.2| 312|Caenorhabditis elegans Hypothetical
protein ZK795.1 protein.
Length = 312
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 138 VELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 263
++L++G YDP ++KY P+ KM + +LG + H
Sbjct: 135 LDLKMGQVTYDPIAKPEKIEKERIKYPPQAKMGMRILGYRIH 176
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,797,020
Number of Sequences: 27780
Number of extensions: 287383
Number of successful extensions: 699
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -