Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30n03
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 35 0.056
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 34 0.075
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 34 0.075
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 33 0.13
Z29094-13|CAI79130.1| 296|Caenorhabditis elegans Hypothetical p... 33 0.17
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 33 0.23
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 30 1.2
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 30 1.2
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 30 1.2
Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical pr... 30 1.6
AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protei... 30 1.6
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 29 2.1
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 29 3.7
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 29 3.7
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 29 3.7
Z54281-4|CAA91049.1| 199|Caenorhabditis elegans Hypothetical pr... 28 6.5
U80437-8|AAB37623.1| 630|Caenorhabditis elegans Exocyst compone... 28 6.5
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 28 6.5
AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical ... 28 6.5
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 28 6.5
Z81557-2|CAB04536.1| 354|Caenorhabditis elegans Hypothetical pr... 27 8.6
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 27 8.6
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 27 8.6
U55373-2|AAX88832.1| 349|Caenorhabditis elegans Serpentine rece... 27 8.6
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 27 8.6
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 27 8.6
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 27 8.6
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 34.7 bits (76), Expect = 0.056
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Frame = +2
Query: 263 TIFIVNVPPYADEKGLTNAFSEAGPISSVKL--CIKPNTMEDDIPKFISEK--QKKSFQV 430
T+F+ N+P +EK + FS+ G ISSV++ + N ++ K K+S
Sbjct: 144 TVFVGNMPLTMNEKSVRRIFSDFGTISSVRMRNLLPANEKLTKRVTHLTGKLNDKQSSLT 203
Query: 431 AYLVFEKVSALDRALQLSELKPLNSESYRI-KTGIQKWIEEFNKEI 565
Y+ F ++++AL+ + K L+ R+ K G +K +EF K++
Sbjct: 204 FYVKFGAEESVEKALKYNGTK-LDDHVIRVDKVGSKK--KEFGKDM 246
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 34.3 bits (75), Expect = 0.075
Identities = 28/88 (31%), Positives = 37/88 (42%)
Frame = +2
Query: 215 KEHSVREHTKDKPAGRTIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPK 394
K + H K+ G IF+ N+ P DEK L + FS G I V P M D
Sbjct: 85 KVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQV-----PKIMRD---- 135
Query: 395 FISEKQKKSFQVAYLVFEKVSALDRALQ 478
+ K F A++ F A D AL+
Sbjct: 136 -VDSGTSKGF--AFINFASFEASDTALE 160
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 34.3 bits (75), Expect = 0.075
Identities = 28/88 (31%), Positives = 37/88 (42%)
Frame = +2
Query: 215 KEHSVREHTKDKPAGRTIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPK 394
K + H K+ G IF+ N+ P DEK L + FS G I V P M D
Sbjct: 95 KVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQV-----PKIMRD---- 145
Query: 395 FISEKQKKSFQVAYLVFEKVSALDRALQ 478
+ K F A++ F A D AL+
Sbjct: 146 -VDSGTSKGF--AFINFASFEASDTALE 170
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 33.5 bits (73), Expect = 0.13
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Frame = +2
Query: 239 TKDKPAGRTIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPKF--ISEKQ 412
T P RTI++ N DE+ L F +AGP+ VK+ ++ + D KF + +
Sbjct: 6 TPSPPEERTIYVANFSEEVDEELLEELFIQAGPV--VKVILR--DVRDSNAKFALVEFED 61
Query: 413 KKSFQVAYLVFEKVSALDRALQLSELKPLNSES-YRIKTG 529
+ S A + V ++ LQ+ N E Y+ K G
Sbjct: 62 ELSVLFAIELMNGVRLFNQELQVKPRNGTNQEELYKRKKG 101
>Z29094-13|CAI79130.1| 296|Caenorhabditis elegans Hypothetical
protein C07A9.13 protein.
Length = 296
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +2
Query: 158 KALALKLNDDSSCPHYIYFKEH---SVREHTKDKPAGRTIFIVNVP 286
K LA++ +D+ PH + +K H SV+ TK KP+ +F V +P
Sbjct: 123 KDLAVECKNDAKVPHPMRYKSHVVCSVQGCTKPKPSNWPLFCVKLP 168
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +2
Query: 254 AGRTIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPKFISEKQKKSFQVA 433
+G ++++ N P E L N FS+AG +S+V++ T F+ ++ + Q A
Sbjct: 2 SGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
Query: 434 YLVFEKVSALDRALQLS 484
F V RAL+++
Sbjct: 62 VDQFNGVDFNGRALRVN 78
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 245 DKPAGRTIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNT 373
D A RT+F+ N+P E+ + + F E G + V + NT
Sbjct: 164 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINT 206
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 245 DKPAGRTIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNT 373
D A RT+F+ N+P E+ + + F E G + V + NT
Sbjct: 164 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINT 206
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 245 DKPAGRTIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNT 373
D A RT+F+ N+P E+ + + F E G + V + NT
Sbjct: 141 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINT 183
>Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical
protein C09H6.2b protein.
Length = 954
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +2
Query: 368 NTMEDDIPKFISEKQKKSFQVAYLVFEKVSALDRALQLSEL---KPLNSESYRIKTGIQK 538
+ E D FI++ ++FQVAY+ F + + +D L ++ + LNS+ + ++
Sbjct: 706 HVFESDEASFIAQSIGQAFQVAYVEFLRANGIDDPSYLRQIDYQEVLNSQEL-LGDELEM 764
Query: 539 WI-EEFNKEILQPKTLKE 589
+ +E KE++ PK E
Sbjct: 765 FAKKETQKEVVVPKKAGE 782
>Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical
protein C09H6.2a protein.
Length = 982
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +2
Query: 368 NTMEDDIPKFISEKQKKSFQVAYLVFEKVSALDRALQLSEL---KPLNSESYRIKTGIQK 538
+ E D FI++ ++FQVAY+ F + + +D L ++ + LNS+ + ++
Sbjct: 734 HVFESDEASFIAQSIGQAFQVAYVEFLRANGIDDPSYLRQIDYQEVLNSQEL-LGDELEM 792
Query: 539 WI-EEFNKEILQPKTLKE 589
+ +E KE++ PK E
Sbjct: 793 FAKKETQKEVVVPKKAGE 810
>AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protein
protein.
Length = 954
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +2
Query: 368 NTMEDDIPKFISEKQKKSFQVAYLVFEKVSALDRALQLSEL---KPLNSESYRIKTGIQK 538
+ E D FI++ ++FQVAY+ F + + +D L ++ + LNS+ + ++
Sbjct: 706 HVFESDEASFIAQSIGQAFQVAYVEFLRANGIDDPSYLRQIDYQEVLNSQEL-LGDELEM 764
Query: 539 WI-EEFNKEILQPKTLKE 589
+ +E KE++ PK E
Sbjct: 765 FAKKETQKEVVVPKKAGE 782
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/86 (25%), Positives = 41/86 (47%)
Frame = +2
Query: 263 TIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPKFISEKQKKSFQVAYLV 442
+++I ++ P E L FS AGP+ S+++C + NT + S AY+
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVC-RDNT------------SRLSLGYAYVN 104
Query: 443 FEKVSALDRALQLSELKPLNSESYRI 520
F++ + +RAL + ++ RI
Sbjct: 105 FQQPADAERALDTMNFEVIHGRPMRI 130
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/86 (25%), Positives = 41/86 (47%)
Frame = +2
Query: 263 TIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPKFISEKQKKSFQVAYLV 442
+++I ++ P E L FS AGP+ S+++C + NT + S AY+
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVC-RDNT------------SRLSLGYAYVN 104
Query: 443 FEKVSALDRALQLSELKPLNSESYRI 520
F++ + +RAL + ++ RI
Sbjct: 105 FQQPADAERALDTMNFEVIHGRPMRI 130
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/86 (23%), Positives = 42/86 (48%)
Frame = +2
Query: 263 TIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPKFISEKQKKSFQVAYLV 442
++++ ++ P +E L FS AGP+ S+++C D+ + S AY+
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVC------RDNATRL-------SLGYAYVN 79
Query: 443 FEKVSALDRALQLSELKPLNSESYRI 520
F++ + +RA+ + L+ + RI
Sbjct: 80 FQQPADAERAMDTMNFEALHGKPMRI 105
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/86 (23%), Positives = 42/86 (48%)
Frame = +2
Query: 263 TIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPKFISEKQKKSFQVAYLV 442
++++ ++ P +E L FS AGP+ S+++C D+ + S AY+
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVC------RDNATRL-------SLGYAYVN 79
Query: 443 FEKVSALDRALQLSELKPLNSESYRI 520
F++ + +RA+ + L+ + RI
Sbjct: 80 FQQPADAERAMDTMNFEALHGKPMRI 105
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/86 (23%), Positives = 42/86 (48%)
Frame = +2
Query: 263 TIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPKFISEKQKKSFQVAYLV 442
++++ ++ P +E L FS AGP+ S+++C D+ + S AY+
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVC------RDNATRL-------SLGYAYVN 79
Query: 443 FEKVSALDRALQLSELKPLNSESYRI 520
F++ + +RA+ + L+ + RI
Sbjct: 80 FQQPADAERAMDTMNFEALHGKPMRI 105
>Z54281-4|CAA91049.1| 199|Caenorhabditis elegans Hypothetical
protein F46C5.7 protein.
Length = 199
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 637 LFSSFGIIFLHKCFNIFFQCFWL*DLFIELFNPFLYASFYS 515
LF +F + + CF IFF +F+ L+ F + S Y+
Sbjct: 44 LFCAFAELIFYDCFVIFFLMIIASFVFVLLYLEFYFGSVYN 84
>U80437-8|AAB37623.1| 630|Caenorhabditis elegans Exocyst component
protein 7 protein.
Length = 630
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +2
Query: 533 QKWIEEFNKEILQPKTLKENIEAFMKKYD 619
++W++ F K I + +++ IE ++K+D
Sbjct: 40 EEWLQNFQKNIAKSAQIRQGIEQVVEKFD 68
>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical protein
K10D2.1a protein.
Length = 1223
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 166 KCLEIVSTFCGFHYVNL 116
KCL + TFCG H V+L
Sbjct: 967 KCLRVYRTFCGTHIVSL 983
>AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical
protein Y45G5AM.7 protein.
Length = 433
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 521 KTGIQKWIEEFNKEILQPKTLKENIEA-FMKKYDSETAK 634
KT +Q +EE +++LQ +T+ EN++A F+K+ T K
Sbjct: 219 KTKVQ--LEEETEKVLQERTIVENLKAQFLKERKESTEK 255
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +2
Query: 245 DKPAGRTIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMED 382
D P +++ N+P E L F GP++++K+ + P + E+
Sbjct: 195 DDPYTTNVYVSNIPHSVTEDDLLFTFGSFGPLAALKI-LYPRSEEE 239
>Z81557-2|CAB04536.1| 354|Caenorhabditis elegans Hypothetical
protein F59A1.4 protein.
Length = 354
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 560 LY*TLQSIFVCQFLFYNFHCLRVLIHSAVMLYPMLTPFQKL 438
LY L ++ + L N H + V+I + YP+L P L
Sbjct: 260 LYLPLATMLLAPILMANLHKIDVIIQFCFVFYPILDPIAVL 300
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 251 PAGRTIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPKFISEKQKKS 421
P G +FI ++P + L N F+ G I S K+ I T F+S + +S
Sbjct: 332 PDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQS 388
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 251 PAGRTIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPKFISEKQKKS 421
P G +FI ++P + L N F+ G I S K+ I T F+S + +S
Sbjct: 496 PDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQS 552
>U55373-2|AAX88832.1| 349|Caenorhabditis elegans Serpentine
receptor, class h protein76, isoform b protein.
Length = 349
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = -2
Query: 566 RSLY*TLQSIFVC----QFLFYNFHCLRVLIHS 480
R +Y IF+C Q LFY F CLR L+ S
Sbjct: 211 RLIYMVSMLIFLCSTFVQLLFYAFTCLRYLVFS 243
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 251 PAGRTIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPKFISEKQKKS 421
P G +FI ++P + L N F+ G I S K+ I T F+S + +S
Sbjct: 496 PDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQS 552
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 251 PAGRTIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPKFISEKQKKS 421
P G +FI ++P + L N F+ G I S K+ I T F+S + +S
Sbjct: 425 PDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQS 481
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 251 PAGRTIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPKFISEKQKKS 421
P G +FI ++P + L N F+ G I S K+ I T F+S + +S
Sbjct: 496 PDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQS 552
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,069,839
Number of Sequences: 27780
Number of extensions: 298009
Number of successful extensions: 857
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -