Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30m23
(639 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 446 e-124
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 105 1e-21
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 104 2e-21
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 91 2e-17
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 91 2e-17
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 91 2e-17
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 91 3e-17
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 86 8e-16
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 82 1e-14
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 81 3e-14
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 71 2e-11
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 71 2e-11
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 67 3e-10
UniRef50_Q3Y0B0 Cluster: Putative uncharacterized protein precur... 37 0.36
UniRef50_Q64B25 Cluster: Fe-S oxidoreductase; n=3; environmental... 36 0.82
UniRef50_UPI0000E47D9C Cluster: PREDICTED: hypothetical protein;... 35 1.4
UniRef50_Q2W8H3 Cluster: Response regulator; n=2; Magnetospirill... 35 1.9
UniRef50_Q11R47 Cluster: CHU large protein; uncharacterized; n=1... 34 2.5
UniRef50_A0NFG9 Cluster: ENSANGP00000031041; n=3; Culicidae|Rep:... 34 2.5
UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|... 34 3.3
UniRef50_Q46Q20 Cluster: Pyrrolo-quinoline quinone; n=3; Burkhol... 34 3.3
UniRef50_UPI0000499FFA Cluster: Rho guanine nucleotide exchange ... 33 5.8
UniRef50_Q7WTE7 Cluster: NanG4; n=1; Streptomyces nanchangensis|... 33 5.8
UniRef50_A5G2F1 Cluster: Putative uncharacterized protein precur... 33 5.8
UniRef50_Q07979 Cluster: Chromatin structure-remodeling complex ... 33 5.8
UniRef50_Q5WCT9 Cluster: Putative uncharacterized protein; n=1; ... 33 7.7
UniRef50_Q5KBU3 Cluster: Expressed protein; n=1; Filobasidiella ... 33 7.7
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 446 bits (1099), Expect = e-124
Identities = 210/212 (99%), Positives = 211/212 (99%)
Frame = +1
Query: 1 PHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVAT 180
PHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVAT
Sbjct: 1020 PHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVAT 1079
Query: 181 TRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKT 360
TRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKT
Sbjct: 1080 TRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKT 1139
Query: 361 ILRGGSYDFSAYRSYQKRHHRMTNFKFDPAHIRAPRSTSAKPLPANDTSDVIIFAPELFD 540
ILRGGSYDFSAYRSYQKRHHRMTNFKFDPAH RAPRSTSAKPLPANDTSD+IIFAPELFD
Sbjct: 1140 ILRGGSYDFSAYRSYQKRHHRMTNFKFDPAHTRAPRSTSAKPLPANDTSDIIIFAPELFD 1199
Query: 541 LQSSAIPRLDTHHLPETRRPLHFDIPSSLPTK 636
LQSSAIPRLDTHHLPETRRPLHFDIPSSLPTK
Sbjct: 1200 LQSSAIPRLDTHHLPETRRPLHFDIPSSLPTK 1231
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 105 bits (251), Expect = 1e-21
Identities = 72/204 (35%), Positives = 104/204 (50%), Gaps = 2/204 (0%)
Frame = +1
Query: 19 ILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSG 198
IL S++ +A+ A G+ A+T SSQGST PA + +D++ + +LVA TRS+SG
Sbjct: 1076 ILISARDSAKSLADCGYHAVTIASSQGSTIAGPAYVHLDNHSRRLSHQHSLVAITRSKSG 1135
Query: 199 VIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGS 378
++FTG+ LF A+L D+ + + F+ L +T P R +LRG
Sbjct: 1136 IVFTGDKAAADGTSSANLLFSAVLLDRRLSVRSLFSALLPCCPFVTEPPTSRAVLLRGAG 1195
Query: 379 YDFSAYRSYQKRHHRMTNFKFDPAHIRAPRSTSAKPLPANDTSDVII--FAPELFDLQSS 552
Y + R R+ A PL + DVI+ AP L D ++
Sbjct: 1196 YGIA----------------------RPLRARDAPPLGPDYVGDVILDSSAPILGDGSAN 1233
Query: 553 AIPRLDTHHLPETRRPLHFDIPSS 624
A P++ TH LPETRRPLHFDIPS+
Sbjct: 1234 A-PQVSTHFLPETRRPLHFDIPSA 1256
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 104 bits (249), Expect = 2e-21
Identities = 67/206 (32%), Positives = 98/206 (47%), Gaps = 2/206 (0%)
Frame = +1
Query: 19 ILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSG 198
+LT+SQ + G+ A+T SSQGST+ I +D N + + S +LVA TRSR+G
Sbjct: 1094 VLTNSQNSMLTMTQCGYSAVTIASSQGSTYSGATHIHLDRNSSLLSPSNSLVALTRSRTG 1153
Query: 199 VIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGS 378
V F+G+ L P + +F A + + F L+ SP+++R L G
Sbjct: 1154 VFFSGDPALLNGGPNSNLMFSAFFQGKSRHIRAWFPTLFPTATLLFSPLRQRHNRLTGAL 1213
Query: 379 YDFSAYRSYQKRHHRMTNFKFDPAHIRA--PRSTSAKPLPANDTSDVIIFAPELFDLQSS 552
+ + R+ RS A + +D SDV+ +AP +
Sbjct: 1214 APAQPSHLLLPDLPSLPPLPASGPYSRSFPVRSRFAAAVKPSDRSDVLSWAPIAVGDGET 1273
Query: 553 AIPRLDTHHLPETRRPLHFDIPSSLP 630
PR+DT LPETRRPLHFD+PS P
Sbjct: 1274 NAPRIDTSFLPETRRPLHFDLPSFRP 1299
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 91.1 bits (216), Expect = 2e-17
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 2/209 (0%)
Frame = +1
Query: 19 ILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSG 198
IL +SQ G+ A+T SSQGST+ A I +D N + + + ++VA TRS+ G
Sbjct: 1253 ILANSQNAGHTLQQCGYAAVTIASSQGSTYDNAACIHLDRNSSLLSPAHSMVALTRSKVG 1312
Query: 199 VIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGS 378
VIFTG+ + P + +F + + + F NE ++T P+K R L G +
Sbjct: 1313 VIFTGDPAQLSNAPSSNRMFSEFFSGRTRPLHDWFHNEFPKATVLTEPLKTRGPRLTGAA 1372
Query: 379 YDFS-AYRSYQKRHHRM-TNFKFDPAHIRAPRSTSAKPLPANDTSDVIIFAPELFDLQSS 552
+S + S + + +F+ D RAP +++ + EL
Sbjct: 1373 SPYSKVFPSGKDSTPALKPDFQGDVRSSRAP---------------IVLGSGEL------ 1411
Query: 553 AIPRLDTHHLPETRRPLHFDIPSSLPTKA 639
P++ TH LPETRRPLH+DIPS++P A
Sbjct: 1412 NAPQVSTHFLPETRRPLHWDIPSAIPESA 1440
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 91.1 bits (216), Expect = 2e-17
Identities = 69/209 (33%), Positives = 98/209 (46%), Gaps = 3/209 (1%)
Frame = +1
Query: 22 LTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 201
LT+S AR G A T SSQGST+ PA I +D N + + + +LVA TRS+ G+
Sbjct: 1202 LTNSMNAARTLNDCGFAATTIASSQGSTYSHPACINLDKNSSQLSHAHSLVALTRSKVGI 1261
Query: 202 IFTGNHRLFQSRPGTAP--LFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGG 375
+FTG+ L + PG++ LF + + + F E IT P+ R GG
Sbjct: 1262 MFTGD--LSRLNPGSSSNLLFSKFKQGESVDLRSLFPFEFPCCPTITEPLSSRPKFCLGG 1319
Query: 376 SYDFSAYRSYQKRHHRMTNFKFDPAHIRAPRSTSAKPLPANDTSDVII-FAPELFDLQSS 552
A A + KPL +D D+++ AP + S
Sbjct: 1320 ------------------------APWLAVNHLADKPLAPSDLPDLLVPEAPVILGSGES 1355
Query: 553 AIPRLDTHHLPETRRPLHFDIPSSLPTKA 639
P++ TH LPETRRPLHFD+ S++P A
Sbjct: 1356 NAPQVSTHFLPETRRPLHFDVASAVPEPA 1384
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 91.1 bits (216), Expect = 2e-17
Identities = 70/209 (33%), Positives = 95/209 (45%)
Frame = +1
Query: 1 PHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVAT 180
PH P+LT+S ++ G+R+ T SSQG TF PA I +D+ + + LVA
Sbjct: 1135 PHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSSANGLVAL 1194
Query: 181 TRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKT 360
TRSRSGV F G G++ +F N+ F + ++LITSP+ R
Sbjct: 1195 TRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLFPQLKLITSPLTTRGP 1254
Query: 361 ILRGGSYDFSAYRSYQKRHHRMTNFKFDPAHIRAPRSTSAKPLPANDTSDVIIFAPELFD 540
L G + S HR NF P HI P + D + P L D
Sbjct: 1255 KLNGATPSASP-------THRSPNFHL-PPHI-----------PLSYDRDFVTVNPTLPD 1295
Query: 541 LQSSAIPRLDTHHLPETRRPLHFDIPSSL 627
RLDTH LP +R PLHFD+P ++
Sbjct: 1296 --QGPETRLDTHFLPPSRLPLHFDLPPAI 1322
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 90.6 bits (215), Expect = 3e-17
Identities = 68/207 (32%), Positives = 96/207 (46%), Gaps = 1/207 (0%)
Frame = +1
Query: 22 LTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 201
L +S + G A+T SSQG TF PA I +D N A + S LVA TRSRSGV
Sbjct: 1040 LVNSHSVVHISEACGWNAVTISSSQGCTFSDPAFIHLDRNTALLSPSNCLVALTRSRSGV 1099
Query: 202 IFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGSY 381
F G+ S G++ +F + QP + + F + + +IT+P+ +R + R G
Sbjct: 1100 YFKGDFTFLSSLSGSSRMFSLAYSGQPIHLPDFFPEIVFQLNMITAPLTKRSSSFRSG-- 1157
Query: 382 DFSAYRSYQKRHHRMTNFKFDPAHIRAPRSTSAKP-LPANDTSDVIIFAPELFDLQSSAI 558
+Q N P I AP + P +P N + DVI+ L+ S
Sbjct: 1158 -------FQ------PNISSAP-KIPAPPNLPCPPHIPTNYSKDVIVNNQALYG--ESLE 1201
Query: 559 PRLDTHHLPETRRPLHFDIPSSLPTKA 639
RL HLP TR LH DI + P+ +
Sbjct: 1202 RRLSVLHLPPTRMTLHSDINITAPSSS 1228
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 85.8 bits (203), Expect = 8e-16
Identities = 70/206 (33%), Positives = 91/206 (44%)
Frame = +1
Query: 16 PILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRS 195
P L +S TA GH ALT SSQG T+ P + +D + + LVA TRSRS
Sbjct: 1063 PNLVNSIATANTMQSLGHHALTISSSQGMTYSDPVTVLLDRHSLLITPQTALVALTRSRS 1122
Query: 196 GVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGG 375
G+ F G+ GT+ +F L P + ++ F + LI PI+ R+ L G
Sbjct: 1123 GIYFIGSMYTASGSAGTSYMFSCALTGLPVDMMSAFP-LFHTLPLIHEPIRSRRHRLVAG 1181
Query: 376 SYDFSAYRSYQKRHHRMTNFKFDPAHIRAPRSTSAKPLPANDTSDVIIFAPELFDLQSSA 555
K HR+ P HI P S S + A+ V APE
Sbjct: 1182 HTPSLHVPPSNKWPHRL----HLPPHI--PTSHSKDVILAHGI--VASNAPE-------- 1225
Query: 556 IPRLDTHHLPETRRPLHFDIPSSLPT 633
RL T HLP TR PLHFD+ S P+
Sbjct: 1226 -RRLTTLHLPPTRLPLHFDLESCNPS 1250
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 81.8 bits (193), Expect = 1e-14
Identities = 65/204 (31%), Positives = 84/204 (41%)
Frame = +1
Query: 22 LTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 201
L +S TA GH ALT SSQG TF P I +D + + S T VA TRS+ GV
Sbjct: 1040 LVNSISTADTMHQLGHHALTISSSQGMTFDTPVSILLDRHTVLLSPSNTFVALTRSKKGV 1099
Query: 202 IFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGSY 381
F GN + + G +F A L Q F + I PIK R+ L GG
Sbjct: 1100 EFLGNLTVASNNFGNNYMFSAALTSQEVCMSQCFPRLFDSLPKIYEPIKSRRVRLTGGDI 1159
Query: 382 DFSAYRSYQKRHHRMTNFKFDPAHIRAPRSTSAKPLPANDTSDVIIFAPELFDLQSSAIP 561
+ R P H+ + DV+ F+ +F S+
Sbjct: 1160 SQGEISKLESR--------AKPPHV-----------SVDYNGDVVHFSSSVFG--SNEER 1198
Query: 562 RLDTHHLPETRRPLHFDIPSSLPT 633
RLD HLP TR L D+ S LP+
Sbjct: 1199 RLDVLHLPPTRLILQSDLVSGLPS 1222
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 80.6 bits (190), Expect = 3e-14
Identities = 62/206 (30%), Positives = 96/206 (46%)
Frame = +1
Query: 22 LTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 201
LT++ TA GH A+T S++ TF I +D + + + LVA TRSR+GV
Sbjct: 1131 LTNATNTALSLQQMGHHAITI-SARRVTFTEAHTILLDRHTNLLSPNNCLVALTRSRTGV 1189
Query: 202 IFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGSY 381
F GN L + GT +F L + N F + + + + PI+ R GS
Sbjct: 1190 YFVGNLHLASNSFGTNYMFSQALCQGTIDLNNVFPHIMPHLPKMYEPIRSRSNRFVSGSL 1249
Query: 382 DFSAYRSYQKRHHRMTNFKFDPAHIRAPRSTSAKPLPANDTSDVIIFAPELFDLQSSAIP 561
+F + R+ + P H+ P +P N + DV++ P L L + P
Sbjct: 1250 NFR-----PTTNSRLLSSLTKPTHL-PPH------IPTNHSLDVLVSNPVL--LGETLDP 1295
Query: 562 RLDTHHLPETRRPLHFDIPSSLPTKA 639
RL+ HLP TR PLH D+ ++P+ +
Sbjct: 1296 RLEVLHLPPTRLPLHLDLLPTVPSSS 1321
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 71.3 bits (167), Expect = 2e-11
Identities = 64/203 (31%), Positives = 88/203 (43%), Gaps = 1/203 (0%)
Frame = +1
Query: 22 LTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 201
L +S TA G A T +SQG T I +D + + S TLVA TRS GV
Sbjct: 1172 LVNSVATANAVIQLGFPATTISASQGVTHHNRVTILLDKHSRLLSPSNTLVALTRSTVGV 1231
Query: 202 IFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGSY 381
F G+ ++ +F + QP N ++F + L+ PI R T L G
Sbjct: 1232 EFLGDIGSLSGTNNSSDMFSRAIYRQPINLSSSFPRIFHLLPLLNKPISRRSTRLIGS-- 1289
Query: 382 DFSAYRSYQKRHHRMTNFKFDPAHIRAPRSTSAKPLPANDTSDVIIFAPELFDLQSSAIP 561
S + R+TN P HI P + + D ++ P +F Q A P
Sbjct: 1290 -----HSPIFHNPRLTNIHL-PPHI-----------PTSYSQDFVVSNP-IF--QGQADP 1329
Query: 562 RLDTHHLPETRRPLHFD-IPSSL 627
RLDTH LP TR PL + +P+ L
Sbjct: 1330 RLDTHFLPPTRLPLQSELLPAQL 1352
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 70.9 bits (166), Expect = 2e-11
Identities = 37/119 (31%), Positives = 60/119 (50%)
Frame = +1
Query: 22 LTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 201
L SQ +A+ G+ A T SSQGST++ P + +D N + + +LVA TRS +
Sbjct: 1094 LACSQSSAKTLRDAGYPATTVSSSQGSTYRTPINLLLDRNSRRLSSAVSLVAATRSTMAI 1153
Query: 202 IFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGS 378
TG+ + Q P P+F A+ N + + F + +I + I R+ +L GG+
Sbjct: 1154 NMTGDRDVLQQGPHNNPVFSALYNANLISLHSLFPTLFAKLPIIRTAITSRRGMLTGGN 1212
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 67.3 bits (157), Expect = 3e-10
Identities = 65/231 (28%), Positives = 97/231 (41%), Gaps = 24/231 (10%)
Frame = +1
Query: 16 PILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRS 195
P+L S AR GHRA+T+ +SQGST+ AP IF+D N V LVA TRSRS
Sbjct: 1212 PLLVPSDSMARALTAGGHRAITYAASQGSTYPAPVHIFLDRNSNLVTNHVALVALTRSRS 1271
Query: 196 GVIFTGNHRLFQSRPGTAPLFEAML----------------NDQPFNFLNTFANELGGME 327
GV F + P LF A P + F +L G+
Sbjct: 1272 GVHFRPRAQDLPRHP--QHLFTAFYKYAIDLLAHEADPSKPRPTPVDVTLLFQQQLRGLT 1329
Query: 328 LITSPIKERKTILRGGSYDFSAYRSYQKRHHRMTNFKFDPAHIRAPRSTSAKPLPANDTS 507
++ P R I G ++ F A+ H + F P ++ + A+ LP + T
Sbjct: 1330 ILRDPSFSR--ITGGATHAFLAHAPLFTNLHGLRPTTF-PDNLPTAPTYLARSLPYHQTE 1386
Query: 508 DV-------IIFAPELFDLQSS-AIPRLDTHHLPETRRPLHFDIPSSLPTK 636
+F D ++ PR++ + ETR PL ++ +LP++
Sbjct: 1387 SYPTSALPHRVFPASTTDWSAADDHPRVNPTFVAETRLPLQSELAPTLPSQ 1437
>UniRef50_Q3Y0B0 Cluster: Putative uncharacterized protein
precursor; n=1; Enterococcus faecium DO|Rep: Putative
uncharacterized protein precursor - Enterococcus faecium
DO
Length = 207
Score = 37.1 bits (82), Expect = 0.36
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = -1
Query: 315 KFICKCVEEVEGLVVEHSLKEWRRTRPRLEQSMVSRKNDSGTGTSCGDESS 163
K I E+V+ VV L EW++T +++++ VS + + TGTS D S
Sbjct: 128 KVITAYSEKVDKKVVADRLAEWKKTNEQVKKTTVSSQKNESTGTSPSDSGS 178
>UniRef50_Q64B25 Cluster: Fe-S oxidoreductase; n=3; environmental
samples|Rep: Fe-S oxidoreductase - uncultured archaeon
GZfos27G5
Length = 554
Score = 35.9 bits (79), Expect = 0.82
Identities = 24/86 (27%), Positives = 38/86 (44%)
Frame = +1
Query: 118 AQIFVDSNVASVHVSATLVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQPFNFLN 297
A++F + VA VH L SR+ +I G H P T+ + + P+N +
Sbjct: 81 AEVFGEDEVAVVH-PRDLEHMVGSRTEIIGIGGHDFLGINPPTSEFVDMLNTGPPYNRVT 139
Query: 298 TFANELGGMELITSPIKERKTILRGG 375
F EL+ P+ KT++ GG
Sbjct: 140 FF-------ELMQKPVMREKTVVAGG 158
>UniRef50_UPI0000E47D9C Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 116
Score = 35.1 bits (77), Expect = 1.4
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = -1
Query: 324 HASKFICKCVEEVEGLVV--EHSLKEWRRTRPRLE--QSMVSRKNDSGTGTSCGDESSRN 157
+A FI E+ EG + +E R R RL+ QS + R+ TG+S + S
Sbjct: 19 NAKDFIVDLEEKSEGFTSHKDQLCREQRFLRRRLDYLQSTLHRQRQDSTGSSLASDDSEK 78
Query: 156 VDRSHIGVDEDLGRSLES 103
D IG D D RS+ES
Sbjct: 79 DDVDVIGYDSD-NRSIES 95
>UniRef50_Q2W8H3 Cluster: Response regulator; n=2;
Magnetospirillum|Rep: Response regulator -
Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)
Length = 387
Score = 34.7 bits (76), Expect = 1.9
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -2
Query: 350 SLIGDVMSSMPPSSFANVLRKLKGWSLSIASKSG 249
+L+ DV+S + P SF LR L+GWSL +A+ G
Sbjct: 144 ALMNDVLSMVAPESFQRSLR-LRGWSLQLAASMG 176
>UniRef50_Q11R47 Cluster: CHU large protein; uncharacterized; n=1;
Cytophaga hutchinsonii ATCC 33406|Rep: CHU large
protein; uncharacterized - Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469)
Length = 1243
Score = 34.3 bits (75), Expect = 2.5
Identities = 26/92 (28%), Positives = 36/92 (39%)
Frame = +1
Query: 7 KSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTR 186
K+ P T++ +A VC+GT G+TF A + S S T +A T
Sbjct: 364 KALPAATATPTSASVCSGTATNIALTSIPTGATFAWTAATASGTVTGSSAGSGTSIAQTL 423
Query: 187 SRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQP 282
S +GV S PGT +N P
Sbjct: 424 SGNGVTNYTVTPTLNSCPGTPVTVAVTVNPNP 455
Score = 32.7 bits (71), Expect = 7.7
Identities = 25/92 (27%), Positives = 36/92 (39%)
Frame = +1
Query: 7 KSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTR 186
K P T++ +A VC+GT + G+TF A + + S T +A T
Sbjct: 716 KPAPTATATPASASVCSGTATNIALTSTPTGATFAWTAATTSGTVTGTSAGSGTSIAQTL 775
Query: 187 SRSGVIFTGNHRLFQSRPGTAPLFEAMLNDQP 282
S +GV S PGT +N P
Sbjct: 776 SGNGVTNYTITPTLNSCPGTPVTVSITVNANP 807
>UniRef50_A0NFG9 Cluster: ENSANGP00000031041; n=3; Culicidae|Rep:
ENSANGP00000031041 - Anopheles gambiae str. PEST
Length = 308
Score = 34.3 bits (75), Expect = 2.5
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -2
Query: 197 PERERVVATR---VAETWTEATLESTKIWAGAW-KVEP*EEQKVSARW-PVPAQTRAVC 36
P RE V+A VA W+E L + K++ G W K P EQ + RW VP TR C
Sbjct: 158 PIRETVMANGQSIVACLWSEIKLRNNKVYLGEWFKYHP--EQNPAFRWLDVPVITRKEC 214
>UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic
virus|Rep: Replicase - White ash mosaic virus
Length = 954
Score = 33.9 bits (74), Expect = 3.3
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +1
Query: 16 PILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRS 195
P+L S + A GH+ T+ QG T A +D + + + A +R+
Sbjct: 577 PVLVPSHKEMTTLADLGHKVYTYSGCQGLTVPR-ATFVIDRDTPACSDNVLYTALSRASE 635
Query: 196 GVIFTGNHRLFQ-SRPGTAP 252
V F + + Q S+ G+ P
Sbjct: 636 TVTFVNTYSMMQASKAGSTP 655
>UniRef50_Q46Q20 Cluster: Pyrrolo-quinoline quinone; n=3;
Burkholderiales|Rep: Pyrrolo-quinoline quinone -
Ralstonia eutropha (strain JMP134) (Alcaligenes
eutrophus)
Length = 576
Score = 33.9 bits (74), Expect = 3.3
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Frame = -2
Query: 278 WSLSIASKSGAVPGLDWNNRWFPVKMTPERERVVATRVAETWT----EATLESTKIW-AG 114
W+L A + +PG + W P+ P+ V A + + T +A K+W G
Sbjct: 403 WTLPTAQGARMLPGANGGVEWSPMAFNPKLRLVYAANLHQPMTYQVEDAPYPGGKLWLGG 462
Query: 113 AWKVEP*EEQ--KVSA 72
A+K P E+Q K+SA
Sbjct: 463 AFKTIPSEQQWGKLSA 478
>UniRef50_UPI0000499FFA Cluster: Rho guanine nucleotide exchange
factor; n=1; Entamoeba histolytica HM-1:IMSS|Rep: Rho
guanine nucleotide exchange factor - Entamoeba
histolytica HM-1:IMSS
Length = 631
Score = 33.1 bits (72), Expect = 5.8
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Frame = +1
Query: 325 ELITSPIKERKTILRGGSYDFSAYRSYQKRHHRMTNFKFDPAHIRAPRSTSAKPL-PAND 501
E+ I E++ IL GG + S + + F P+ R+ STS P P +
Sbjct: 444 EMSKRSIFEQQKILSGGDINDSEQNDDWQEFEDI-EFDKQPSP-RSLSSTSVPPTQPKHS 501
Query: 502 TSDVIIFAPELFDLQ-SSAIPRLDTHHLPETRRPLHFDIPSSLPT 633
S V+ P+ LQ SS++ L + HLPE +R +PT
Sbjct: 502 PSPVVGNTPQKIQLQHSSSMQTLPSSHLPEPKRKPPLPPNKPIPT 546
>UniRef50_Q7WTE7 Cluster: NanG4; n=1; Streptomyces
nanchangensis|Rep: NanG4 - Streptomyces nanchangensis
Length = 346
Score = 33.1 bits (72), Expect = 5.8
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 37 QTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGVIFTGN 216
+ AR+CAGTG R L ++ G+ + + ++N V A VA R +I G+
Sbjct: 74 ELARLCAGTGARVLV--NASGAVWGGGERQMAEANTELVGRLAGAVARLPGRPRLIHLGS 131
Query: 217 -HRLFQSRPGTA 249
+ +RPGTA
Sbjct: 132 AYEYGPARPGTA 143
>UniRef50_A5G2F1 Cluster: Putative uncharacterized protein
precursor; n=1; Acidiphilium cryptum JF-5|Rep: Putative
uncharacterized protein precursor - Acidiphilium cryptum
(strain JF-5)
Length = 214
Score = 33.1 bits (72), Expect = 5.8
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +1
Query: 475 SAKPLPANDTSDVIIFAPELFDLQSSAIPRLDTHHL 582
SA LP N+T DVII AP L L + + R D +L
Sbjct: 85 SALDLPKNETVDVIITAPSLAALTTKGLVRADVRNL 120
>UniRef50_Q07979 Cluster: Chromatin structure-remodeling complex
protein RSC58; n=3; Saccharomycetales|Rep: Chromatin
structure-remodeling complex protein RSC58 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 502
Score = 33.1 bits (72), Expect = 5.8
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -1
Query: 252 WRRTRPRLEQSMVSRKNDSGTGTSCGDESSRNVDRSHIGVDEDLGRSLES*TLRGAESE 76
+ + +++Q + N+ G DE+++NVD GV +D G + T+ A SE
Sbjct: 320 YEKNEKKVKQEELLNTNEEGINRKQNDENNKNVDGKSNGVQDDGGDNDNDATIASANSE 378
>UniRef50_Q5WCT9 Cluster: Putative uncharacterized protein; n=1;
Bacillus clausii KSM-K16|Rep: Putative uncharacterized
protein - Bacillus clausii (strain KSM-K16)
Length = 125
Score = 32.7 bits (71), Expect = 7.7
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = -2
Query: 236 LDWNN--RWFPVKMTPERERVVATRVAETWTEATLEST--KIWAGAWKVEP*EEQKVSAR 69
LDWN RWFPV+ E R A R + + E + S ++W G + + +
Sbjct: 25 LDWNRELRWFPVQSVSETTRQKAARYVDMYDEIYVLSKEGQVWIGFQAIRQILSRLPALA 84
Query: 68 WPVP 57
W P
Sbjct: 85 WLTP 88
>UniRef50_Q5KBU3 Cluster: Expressed protein; n=1; Filobasidiella
neoformans|Rep: Expressed protein - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 438
Score = 32.7 bits (71), Expect = 7.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 400 SYQKRHHRMTNFKFDPAHIRAPRSTSAKPLPANDTSD 510
SYQ R HR ++DP H R P S+S+ P P T +
Sbjct: 124 SYQHRSHRTHTDQWDPYHPR-PCSSSSSPSPTTSTDE 159
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,300,917
Number of Sequences: 1657284
Number of extensions: 14432922
Number of successful extensions: 46563
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 44682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46552
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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