Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30m23
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 28 1.3
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 5.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.2
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 9.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.2
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 25 9.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.2
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 25 9.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.2
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 502 TSDVIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIP 618
+S + + E F LQ + RL H P T R H D P
Sbjct: 128 SSSAVDWLSERFGLQMDQLSRLAGHSEPRTHRGTHPDYP 166
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 340 PIKERKTILRGGSYDFSAYRSYQKRHHRMTNFKFDPAHIRAP-RSTSAKPLPANDTSDVI 516
P+ ER T+ ++A S QKR+ R+T D AH +P + P + + I
Sbjct: 170 PLLERNTL-------YAAKASIQKRYERLTKRGVDQAHESSPVKKAKLDDYPTSSNEETI 222
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 257 LRLCSTTNPSTSSTHLQMNLEAWNSLHHRSKNERPF 364
LR +T+P+T H+ + +++N+ H + PF
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPF 1131
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 257 LRLCSTTNPSTSSTHLQMNLEAWNSLHHRSKNERPF 364
LR +T+P+T H+ + +++N+ H + PF
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPF 1131
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 257 LRLCSTTNPSTSSTHLQMNLEAWNSLHHRSKNERPF 364
LR +T+P+T H+ + +++N+ H + PF
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPF 1131
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 126 LRRLQCGFCPRFCYSRRHNSFPFRSHFYGKP 218
++ +C FC R + + H RSH KP
Sbjct: 1 MKSYECPFCKRVFHRQEHQVRHIRSHTGEKP 31
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 257 LRLCSTTNPSTSSTHLQMNLEAWNSLHHRSKNERPF 364
LR +T+P+T H+ + +++N+ H + PF
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPF 1131
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 257 LRLCSTTNPSTSSTHLQMNLEAWNSLHHRSKNERPF 364
LR +T+P+T H+ + +++N+ H + PF
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPF 1131
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 257 LRLCSTTNPSTSSTHLQMNLEAWNSLHHRSKNERPF 364
LR +T+P+T H+ + +++N+ H + PF
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPF 1131
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 9.2
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 212 ETIDCSNRGLVRRHSLRLCSTTNPSTSSTHLQMNLEA 322
E D S+ L HSL+ STT+ S SST M+ E+
Sbjct: 73 EESDKSDYLLDHAHSLQELSTTHSSLSSTLTSMSEES 109
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 257 LRLCSTTNPSTSSTHLQMNLEAWNSLHHRSKNERPF 364
LR +T+P+T H+ + +++N+ H + PF
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPF 1131
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 257 LRLCSTTNPSTSSTHLQMNLEAWNSLHHRSKNERPF 364
LR +T+P+T H+ + +++N+ H + PF
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPF 1131
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 257 LRLCSTTNPSTSSTHLQMNLEAWNSLHHRSKNERPF 364
LR +T+P+T H+ + +++N+ H + PF
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPF 1131
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 9.2
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Frame = +1
Query: 94 QGSTFQAPAQIFVDSNVASVHVSATLVATT---RSRSGVIFTGNHR-LFQSRPGTAP-LF 258
QG T A A +FVD N+ V +LV + R + N R L + R T+P +
Sbjct: 178 QGYT-SAEAPVFVDENICVTPVVVSLVKNSFKKRKHENINRGTNARPLKEDRANTSPHWY 236
Query: 259 EAMLNDQPFNFLNTFANELGGME 327
+ ND F N N +E
Sbjct: 237 SHVSNDTSFVVENAMYNTPAPLE 259
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 257 LRLCSTTNPSTSSTHLQMNLEAWNSLHHRSKNERPF 364
LR +T+P+T H+ + +++N+ H + PF
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPF 1131
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 257 LRLCSTTNPSTSSTHLQMNLEAWNSLHHRSKNERPF 364
LR +T+P+T H+ + +++N+ H + PF
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPF 1131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,108
Number of Sequences: 5004
Number of extensions: 58994
Number of successful extensions: 172
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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