Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30m23
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 31 0.77
11_06_0092 + 19973364-19975983,19976272-19976648 30 1.3
01_01_0681 + 5235623-5235873,5235958-5236285,5236786-5236935,523... 30 1.3
06_03_0066 - 16145398-16145475,16145638-16145700,16146432-161465... 30 1.8
03_05_0615 + 26137785-26138593,26139307-26141368 29 3.1
05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583 29 4.1
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 28 5.4
05_05_0200 - 23171803-23171906,23172304-23173951 28 5.4
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 28 5.4
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 28 7.2
10_08_0032 - 14288522-14290465 28 7.2
05_06_0147 + 25986259-25987701 28 7.2
05_01_0009 - 64754-65073,65202-65469 28 7.2
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414... 28 7.2
05_07_0087 - 27603263-27603373,27603510-27603618,27603883-276039... 27 9.5
>05_07_0093 - 27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 31.1 bits (67), Expect = 0.77
Identities = 24/81 (29%), Positives = 38/81 (46%)
Frame = -2
Query: 368 RRMVFRSLIGDVMSSMPPSSFANVLRKLKGWSLSIASKSGAVPGLDWNNRWFPVKMTPER 189
RRM S + + SM PS+F + LR+ G S S+ ++ + + VKMT +
Sbjct: 967 RRMSAESNMSYYLRSMTPSAFESALRQKDGELASYTSRLASLESIRNSLAEELVKMTEQC 1026
Query: 188 ERVVATRVAETWTEATLESTK 126
E++ A A LE+ K
Sbjct: 1027 EKLRTEASALPGLRAELEALK 1047
>11_06_0092 + 19973364-19975983,19976272-19976648
Length = 998
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -2
Query: 350 SLIGDVMSSMPPSSFANVLRKLKGWSLSIASKSGAVPGLDWN 225
+L + +S PSSF LR+L SL+ + SGA+P WN
Sbjct: 180 ALAENTLSGSIPSSFGQ-LRRLSFLSLAFNNLSGAIPDPIWN 220
>01_01_0681 +
5235623-5235873,5235958-5236285,5236786-5236935,
5237255-5237503,5238581-5238670,5238781-5238966,
5239477-5239598,5242915-5243011
Length = 490
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +3
Query: 99 FNFPGSCPNLRRLQCGFCPR---FCYSRR--HNSFPFRSHFYGKPSIVPIEA 239
F +P L + C + PR F RR H S FRSH +G ++V +A
Sbjct: 54 FGWPVVGETLEFVSCAYSPRPEAFVDKRRKLHGSAVFRSHLFGSATVVTADA 105
>06_03_0066 -
16145398-16145475,16145638-16145700,16146432-16146518,
16147168-16147246,16147359-16147478,16149289-16149440
Length = 192
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 132 RLQCGFCPRFCYSRRHNSFPFRSHFY 209
R++C P FC +R+ N +PF FY
Sbjct: 117 RVECPKYPGFCLTRQKNEYPFIEVFY 142
>03_05_0615 + 26137785-26138593,26139307-26141368
Length = 956
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +1
Query: 292 LNTFANELGGMELITSPIKERKTILRGGSYDFSAYRSYQKRHHRMTNFKFDPAHIRAPRS 471
+N +L ME + S +KE + +R +YD HHR++ DP + +
Sbjct: 43 MNALLLKLADMEELDSQLKEWRNKVRELAYDVEDCIDAFAHHHRLSRGDADPGGLIRRAA 102
Query: 472 TSAKPLPAN 498
+ K L A+
Sbjct: 103 RNMKKLRAS 111
>05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583
Length = 602
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +1
Query: 1 PHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVAT 180
P+ +P+ +S + + + L F S G F A VA++++ LVA
Sbjct: 65 PNADFPVYSSQLKEVKGISQVQLNFLAFASDAGKLFGWFA------GVAALYLPLWLVAV 118
Query: 181 TRSRSGVIFTGNHRLFQSRPGTA 249
+ G++ G LF RPG A
Sbjct: 119 VGASFGLVGYGVQFLFLERPGLA 141
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 463 PRSTSAKPLPANDTSDVIIFAPELFDLQSSAIPRLDTHHLPETRRPLH 606
P++T + P +++ II+AP L P + +H P+T LH
Sbjct: 401 PQTTESSPPRQSNSGKDIIYAPGLIPNGGGLSPPVIGYHAPKTSTLLH 448
>05_05_0200 - 23171803-23171906,23172304-23173951
Length = 583
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 275 TNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMTF 388
T P+TS T L+ S R RP +V GLM F
Sbjct: 295 TRPATSRTSLEKRYSFIQSEERRFVESRPEWVGGLMDF 332
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +1
Query: 1 PHKSYPILTSSQQTARVCAGTG-HRALTFCSS---QGSTFQAPA-QIFVDSNVASVHVSA 165
P P T++ T+ VC+G G R L + S Q + + A ++ +D +A VH +
Sbjct: 267 PDAPPPAATATATTSSVCSGNGDRRQLNWRDSHNNQSAEWSASQDELDLDDELAGVHRRS 326
Query: 166 TLVATTRSRSGVIFTGNHRLFQSR 237
++ RSR+ + + R + R
Sbjct: 327 AARSSKRSRTAEVHNLSERRRRDR 350
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 29 QVSRRRESVPVQAIERSLSAPLKVQLSRLLPKSSSTPMWLLST 157
Q SR+R+ P + ++ LK ++ + P + TP + LST
Sbjct: 1187 QKSRKRKKAPASPEQPIIAPLLKTDIASVTPATQHTPGFTLST 1229
>10_08_0032 - 14288522-14290465
Length = 647
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -1
Query: 468 TRSPDMSWIEFKIGHPVMSFLVASVG*KVIRPATKNGLSFF 346
T +PD+SW+ F+ G V+ L+ S VI P+ +G S+F
Sbjct: 545 TNNPDVSWVTFQ-GSDVIYRLIRSANGGVI-PSLISGESYF 583
>05_06_0147 + 25986259-25987701
Length = 480
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 478 AKPLPANDTSDVIIFAPELFDLQSSAIPRLDTHHLPETRRP 600
A P P T+D + D ++A P + HHLP P
Sbjct: 40 AVPTPPASTADFFSSSAPAVDRMAAANPSISFHHLPPPEYP 80
>05_01_0009 - 64754-65073,65202-65469
Length = 195
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +2
Query: 218 IDCSNRGLVRRHSLRLCSTTNPSTSSTHLQMNLEAWNSLHHRSKNE 355
+D +N L+RR L TT+PS+SST + E +N R K E
Sbjct: 64 MDAANVHLLRRF-FTLHKTTSPSSSSTRINAQAE-FNPSSSRQKEE 107
>04_04_0285 - 24136865-24137000,24137554-24137611,24138142-24141480,
24141789-24142218,24142861-24142928,24143015-24143165
Length = 1393
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 240 RPRLEQSMVSRKNDSGTGTSCGDESSRNVDRSHIGVDED 124
R R EQ+ K D GTGT D SS D +G+ +
Sbjct: 1275 RKRYEQTSGKSKKDKGTGTIFNDASSDGSD-DELGIGSE 1312
>05_07_0087 -
27603263-27603373,27603510-27603618,27603883-27603936,
27605072-27605136,27607789-27608049
Length = 199
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 225 QSMVSRKNDSGTGTSCGDESSRNVDRSHIGVDEDL 121
Q ++ + G TS G+ +S+N D G+D +L
Sbjct: 163 QELIDLMREGGHSTSAGESTSKNSDEDPEGLDLEL 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,595,323
Number of Sequences: 37544
Number of extensions: 413546
Number of successful extensions: 1373
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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