Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30m23
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82267-2|CAB05190.1| 410|Caenorhabditis elegans Hypothetical pr... 30 1.6
L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 30 1.6
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 30 1.6
Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical pr... 29 3.7
U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical pr... 29 3.7
U41993-4|AAA83446.4| 574|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF016439-4|AAV28339.1| 489|Caenorhabditis elegans Hypothetical ... 29 3.7
Z34533-5|CAA84298.1| 781|Caenorhabditis elegans Hypothetical pr... 28 6.5
U21317-5|AAA62526.2| 895|Caenorhabditis elegans Hypothetical pr... 27 8.6
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 27 8.6
>Z82267-2|CAB05190.1| 410|Caenorhabditis elegans Hypothetical
protein F38C2.4 protein.
Length = 410
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -1
Query: 231 LEQSMVSRKNDSGTGTSCGDESSRNVDRSHIGVDEDLGRSLES*TLRGAESERSM 67
LE M +RK+D+G CG E RN + LG +E + ESE +
Sbjct: 19 LEIFMSARKSDTGKWKDCGFEMIRNKIKKKYVSQSGLGSQVELSGRKAVESENEI 73
>L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical
protein C06G4.1 protein.
Length = 886
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 157 VSATLVATTRSRSGVIFTGNHRLFQSR-PGTAPLFEAMLNDQPFNFLNTFANEL 315
V +L + + RSG+I + RL R G P+F +N+Q N N + N +
Sbjct: 244 VDDSLSSNSYLRSGMIMASSERLEDPRFSGRLPVFARQINNQEINNDNFYQNSI 297
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
trithorax-related protein LIN-59 protein.
Length = 1312
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +2
Query: 266 CSTTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMTFQPTEA 403
CST P S MN+E W S S +R V LM P A
Sbjct: 254 CSTPAPPKESLPTGMNVEEWGSFLIASNMDREEIVRRLMAHDPEMA 299
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +2
Query: 266 CSTTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMTFQPTEA 403
CST P S MN+E W S S +R V LM P A
Sbjct: 254 CSTPAPPKESLPTGMNVEEWGSFLIASNMDREEIVRRLMAHDPEMA 299
>Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical
protein F48C11.2 protein.
Length = 708
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +1
Query: 406 QKRHHRMTNFKFDPAHIRAPRSTSAKPLPANDTSDVIIFAP---ELFDLQSSAIPRLDTH 576
QK ++ N +FDP+ +R+P + K P N T + F+P E + + IP
Sbjct: 512 QKPNNASNNEEFDPSGLRSPPIPAGK--PNNGTPKRMTFSPIADESEEENGARIPSPPRE 569
Query: 577 HLPETRRPLHFDIPSSLPTKA 639
RP + D P+ P A
Sbjct: 570 RRASGGRPGNNDGPNLSPNAA 590
>Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical
protein F43D9.2 protein.
Length = 307
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 64 GHRALTFCSSQGSTFQAPAQIFVD-SNVASVHVSATLVATTRSRSGVIFTGNHRLFQSRP 240
G++ C+++ ST +A Q+F D +N+A SA L + + T H+L QS+P
Sbjct: 216 GNKCDVECTNRVSTDEA--QMFADRNNMALFETSAKLASEADHVESIFLTLLHKLQQSKP 273
>U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical
protein C32E12.1 protein.
Length = 552
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Frame = +1
Query: 325 ELITSPIKERKTILRGG-SYDFSAYRSYQKRHHRMTNFKFDPAHIRAPRSTSAKPLPAND 501
E++ +KE K G S D + +++Q + K + + KP+P
Sbjct: 212 EIVVKEVKEEKKKDTGSVSEDENDIKAFQAEKSKEIETKKNEEMEKKQEEPKVKPVPPGT 271
Query: 502 TSDVIIFAPELFD---LQSSAIPRLDTHHLPETRRP 600
T D PE S+ P LD +PE R P
Sbjct: 272 TPDTTTTTPEKKSKSITDSNIKPELD--EIPEARTP 305
>U41993-4|AAA83446.4| 574|Caenorhabditis elegans Hypothetical
protein F44A2.3 protein.
Length = 574
Score = 28.7 bits (61), Expect = 3.7
Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
Frame = +1
Query: 157 VSATLVATTRSRSGVIFTGNHRLFQSRPGTAPLFEAM--LNDQPFNFLNTFANELG---- 318
V+ L T + TGN + G + L + +NDQP+ N E G
Sbjct: 109 VTGQLSGTITVILNIPITGNVIVTGRSIGVSALLDLQKTVNDQPYLRFNECRIENGIVSA 168
Query: 319 ---GMELITSPIKERKTILRGGSYDFSAYRSYQKRHHRMTNFKFDPAHIRAPRSTSAKPL 489
M L+T I ++ + G + + +R+T F R PRS SAK L
Sbjct: 169 RVANMGLLTDTINQKFGSVLSGQSRLQLEEAICEHMNRLTQQHFSTRLARIPRSLSAKEL 228
>AF016439-4|AAV28339.1| 489|Caenorhabditis elegans Hypothetical
protein R02F11.3b protein.
Length = 489
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = +1
Query: 403 YQKRHHRMTNFKFDPAHI----RAPRSTSAKPLPANDTSDVIIFAPELFDLQSSAIPRLD 570
Y+K++ + NFK D I R R T++K +D +DVI P + + + L
Sbjct: 85 YKKQNELLENFKNDSEQIEQFNRTRRRTTSK--EEDDDADVIAAIPPPIPEEKAVVAPL- 141
Query: 571 THHLPETRRP--LHFDIPSS 624
H+ T P + FD+P S
Sbjct: 142 VKHIDGTDEPEVVIFDVPRS 161
>Z34533-5|CAA84298.1| 781|Caenorhabditis elegans Hypothetical
protein B0285.7 protein.
Length = 781
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -2
Query: 272 LSIASKSGAVPGLDWNNRWFPVKMTPERERVVATRVAETWTEATLESTKI 123
L++ +K+G P +DW N V +T + V+T ++ T + +T+I
Sbjct: 38 LTLFNKNGDGPDMDWQNA-TEVPLTTTSKATVSTTTTQSATTPSTTTTRI 86
>U21317-5|AAA62526.2| 895|Caenorhabditis elegans Hypothetical
protein B0495.7 protein.
Length = 895
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 211 GNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITS 339
G LFQ+ PG + L + L + P F + A E+ +I S
Sbjct: 253 GREILFQAGPGNSWLLQTYLENAPHPFCSVLAQEIFQSGIIPS 295
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 206 KMTPERERVVATRVAETWTEATLESTKIWAGAWKVEP*EEQKVSARWP 63
K TP +E VV + + T LES++ G W E ++K + P
Sbjct: 410 KCTPVKECVVESSIQFTCDNKCLESSRRCDGVWDCEDKSDEKGCDKCP 457
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,417,831
Number of Sequences: 27780
Number of extensions: 342127
Number of successful extensions: 1079
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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