Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30m23
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   2.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   5.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.6  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 355 KTILRGGSYDFSAYRSYQKRHHRMTNFKFDPAHIRAP 465
           KTI    +Y+ + Y +Y+K ++ +   +  P  I  P
Sbjct: 88  KTIHNNNNYNNNNYNNYKKLYYNINYIEQVPVPIPVP 124


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 456 DMSWIEFKIGHP 421
           +MS I+FK+GHP
Sbjct: 569 NMSAIQFKLGHP 580


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 155  WTEATLESTKIWAGAWKVE 99
            W+E+ +ES     G W+VE
Sbjct: 1213 WSESNVESKGRLLGFWRVE 1231


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 355 KTILRGGSYDFSAYRSYQKRHHRMTNFK 438
           KTI    +Y+ + Y +Y   ++   N+K
Sbjct: 88  KTIHNNNNYNNNNYNNYNYNNNNYNNYK 115


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 120 PNLRRLQCGFCPRFCYSRRHNSFPFRSHFYGKP 218
           P +RR+     PR    RR+N+   RS +  +P
Sbjct: 339 PWVRRVFIHVLPRLLVMRRYNTPSKRSDYDSRP 371


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 311 SFANVLRKLKGWSLSIASKSGAVP 240
           S   + RK+ G++L  ASK   VP
Sbjct: 380 SIDTLARKILGYNLEAASKYQIVP 403


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 311 SFANVLRKLKGWSLSIASKSGAVP 240
           S   + RK+ G++L  ASK   VP
Sbjct: 380 SIDTLARKILGYNLEAASKYQIVP 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,297
Number of Sequences: 438
Number of extensions: 4668
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)