Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30m22
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         35   0.008
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    27   2.8  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   3.7  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   4.8  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   6.4  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    25   6.4  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   8.5  

>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 18/144 (12%)
 Frame = +1

Query: 175 VMSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYPNLKIIGEEDS--LEDEGEVVSD 348
           +  K   G + K      T  D  AQ  +++ L   +PN  I+GEEDS  L +  +  S 
Sbjct: 29  IKEKSAAGALTKDDKSPVTIGDFGAQAIVISMLKDAFPNDPIVGEEDSDFLRENTQTCSR 88

Query: 349 -W-LVNEI------DKEILKLQCPPNLQEVKEEDIV-------VW-VDPLDGTSEYTQGF 480
            W LV E        KE+ +++    +  + ++          +W +DP+DGT  + +G 
Sbjct: 89  VWELVQETIQHATEYKELGQIKSAEEMMSIIDQGSYHGGRNGRMWTLDPIDGTKGFLRG- 147

Query: 481 LEHVTVLIGIAVNETPVAGVIHQP 552
                + + +  N  PV   I  P
Sbjct: 148 -AQYAICLALIENGKPVVSAIGCP 170


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 310 EDSLEDEGEVVSDWLVNEIDKEILKLQCPPNLQEVKEEDIVVWVDPLDGTS 462
           E  L D+ E  S + +NE+ K+I +       QE +  D + W D L  TS
Sbjct: 171 EGELHDDNETDS-FRINELAKQIQETSLGATTQEDESSDGICW-DELSTTS 219


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 345 THNFTLILQTIFF--TYYF*VRILSCK*CNNTALSRPICFCLIVVFTLFHYTKFPFAHYI 172
           TH FT  ++TIFF  T  F  ++ S     N  +S    F L +V  L  +T+  F  ++
Sbjct: 137 THTFTNSIETIFFFLTILFLSKLNSVP--LNKKISYLYTFLLAIVSVLGFFTRITFLAFV 194


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 298 IIGEEDSLEDEGEVVSDWLVNEIDKEILKLQCPPNLQEVKE-EDIVVWVDPLDGTSEYT 471
           II   DS+ +  EV+     + IDK+I KLQ   N+  V E E I+ +V  L  +S YT
Sbjct: 275 IITALDSVSNSQEVLL-LSTDSIDKKIAKLQNSTNIFYVPEHEPILAFVHQL--SSSYT 330


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 130 SSVSVANRAGKIVRDVMSKGEL 195
           S +++ NR GK+ + + SKG++
Sbjct: 235 SKIAIINREGKLTQSLQSKGDV 256


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 52  FYYYSEI**QLIIMYGSVPLIVRLLASSVSV 144
           FY Y E+   L I+ G VP+   L+ SS S+
Sbjct: 238 FYTYEEVYHDLQIVRGYVPIACNLITSSDSL 268


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 403 LQEVKEEDIVVWVDPLDGTSEYTQGFLEH 489
           L++ KE+    W++ +D +  +  GF E+
Sbjct: 507 LEQNKEQYEKTWIETIDSSGNHVSGFYEN 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,165
Number of Sequences: 5004
Number of extensions: 41769
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)