Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30m22
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0170 + 21482962-21483018,21483133-21483183,21483313-214835... 48 8e-06
07_03_0878 - 22251023-22251166,22251279-22251329,22251425-222515... 42 3e-04
07_01_0658 + 4923205-4923334,4923448-4923526,4923629-4923723,492... 37 0.014
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 31 0.93
07_03_0879 - 22256033-22256173,22256417-22256492,22256830-222572... 29 2.8
07_03_0724 + 20975942-20976867,20977397-20977476,20977976-209783... 29 2.8
12_02_0129 - 13981684-13982529 29 3.8
12_02_0112 + 13783758-13784717 29 3.8
10_07_0078 + 12657239-12658324 29 3.8
02_01_0523 - 3792864-3792962,3793509-3793610,3793861-3793974,379... 29 3.8
01_03_0151 - 13229861-13230347,13230442-13230540,13230701-132309... 28 5.0
01_06_1739 - 39573754-39574194,39574485-39574664 28 6.6
03_02_0583 + 9635002-9637299 27 8.7
>03_05_0170 +
21482962-21483018,21483133-21483183,21483313-21483500,
21483587-21483671,21483848-21483902,21483998-21484041,
21485045-21485113,21485207-21485307,21485396-21485452,
21485540-21485636
Length = 267
Score = 47.6 bits (108), Expect = 8e-06
Identities = 45/146 (30%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Frame = +1
Query: 118 RLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYPNLK 297
+ LA +V A AG+I+R + + + KG+ D TE D++ + I L YP+ K
Sbjct: 5 QFLAVAVDAAKNAGEIIRKGFYQTK-NVEHKGQVDLVTETDKACEDLIFNHLRKHYPDHK 63
Query: 298 IIGEEDSLEDEGEVVSDWLVNEIDKEILKLQCPPNLQEVKEEDIVVW-VDPLDGTSEYTQ 474
I GE S L D D W VDPLDGT+ +
Sbjct: 64 FI---------GEETSAALGATADLT----------------DDPTWIVDPLDGTTNFVH 98
Query: 475 GFLEHVTVLIGIAVNETPVAGVIHQP 552
GF V V IG+ V + P GV++ P
Sbjct: 99 GF-PFVCVSIGLTVGKIPTVGVVYNP 123
>07_03_0878 -
22251023-22251166,22251279-22251329,22251425-22251500,
22251847-22252229,22252983-22253042,22253133-22253368,
22253457-22253559,22254692-22254824,22254930-22255039
Length = 431
Score = 42.3 bits (95), Expect = 3e-04
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Frame = +1
Query: 118 RLLASSVSVANRAGKIVRDV---MSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYP 288
R LA++ + RA ++ DV + G+ I+EK T AD Q I L +P
Sbjct: 63 RELAAAAAAVERACRLCVDVKRTLLSGDKKILEKNDQTPVTVADFGVQALISLELQRLFP 122
Query: 289 NLKIIGEEDSLE----DEGEVVSDWLVNEIDKEILKLQCPPNLQEVKEEDIV-------- 432
++ ++ EEDS + + S+ LV I + + N + +D++
Sbjct: 123 SIPLVAEEDSASLRSSNTDDNSSNVLVESISSAVAEKVSNAN-SLLTHDDVLRAIDRGGK 181
Query: 433 -----------VWV-DPLDGTSEYTQGFLEHVTVLIGIAVNETPVAGVIHQPYYKNIVXG 576
WV DP+DGT + G V + + VNE VAGV+ P + N
Sbjct: 182 NAVSFDSNPASYWVLDPIDGTKGFLGGDDALYVVGLALVVNEKVVAGVMGCPNWSNATIA 241
Query: 577 DKK 585
+K
Sbjct: 242 SRK 244
>07_01_0658 +
4923205-4923334,4923448-4923526,4923629-4923723,
4923802-4923851,4924216-4924340,4924703-4924769,
4924871-4924960,4925281-4925392,4925597-4925667
Length = 272
Score = 36.7 bits (81), Expect = 0.014
Identities = 38/147 (25%), Positives = 62/147 (42%)
Frame = +1
Query: 112 IVRLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYPN 291
+ RL+ + A+ AG+++R + + I++K T ADR A+ +V+ + +P+
Sbjct: 9 VERLVEVAQRAADAAGEVLRKYFRQ-RVEIIDKEDQSPVTIADREAEEAMVSVILKSFPS 67
Query: 292 LKIIGEEDSLEDEGEVVSDWLVNEIDKEILKLQCPPNLQEVKEEDIVVWVDPLDGTSEYT 471
+ GEE+ W E K D V +DP+DGT +
Sbjct: 68 HAVFGEENG----------WRCVE-----------------KSADYVWVLDPIDGTKSFI 100
Query: 472 QGFLEHVTVLIGIAVNETPVAGVIHQP 552
G T LI + PV G+I QP
Sbjct: 101 TGKPLFGT-LISLLYKGKPVIGIIDQP 126
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 30.7 bits (66), Expect = 0.93
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Frame = +1
Query: 115 VRLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQTE---ADRSAQRCIVASLAAQY 285
VRL +S +V ++ DVM+ +G V D QT+ D A +V+S
Sbjct: 101 VRLDDTSAAVDEGGASLIDDVMNTLPVGGVASFDDGPQTDKNAQDEGALIDVVSSTVLND 160
Query: 286 PNLKIIGEEDSLEDEGEVVSDWLV--NEIDKEILKLQC 393
++ ++ DS+ +EG + D LV E KE++ + C
Sbjct: 161 ASIDLVKASDSVSEEGTGM-DILVQPGEDIKEMVTIAC 197
>07_03_0879 -
22256033-22256173,22256417-22256492,22256830-22257212,
22257924-22257983,22258073-22258303,22258475-22258562,
22259265-22259365,22259586-22259727,22259824-22259939
Length = 445
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +1
Query: 436 WV-DPLDGTSEYTQGFLEHVTVLIGIA--VNETPVAGVIHQPYYKNIVXGDKK 585
WV DP+DGT +++ ++ ++G+A VN VAGV+ P + + ++K
Sbjct: 226 WVLDPIDGTQGFSK--VDDTLYVVGLALVVNGKVVAGVMGSPNWASDTIANRK 276
>07_03_0724 +
20975942-20976867,20977397-20977476,20977976-20978370,
20988410-20989444
Length = 811
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/100 (24%), Positives = 50/100 (50%)
Frame = +1
Query: 220 DYQTEADRSAQRCIVASLAAQYPNLKIIGEEDSLEDEGEVVSDWLVNEIDKEILKLQCPP 399
++ + +R+A C ++++ + L+ + +E+ +EDE E D LV + K
Sbjct: 576 NWAIDENRTACLCFDPAISSHFHVLEYVEDEEYVEDEDEY--DALVTGVVIYSSKTGLWS 633
Query: 400 NLQEVKEEDIVVWVDPLDGTSEYTQGFLEHVTVLIGIAVN 519
+++++V + P+D T + GFL VT +AV+
Sbjct: 634 LHVNGWDDEVMVSL-PVDRTRVFLNGFLHSVTTCDIVAVD 672
>12_02_0129 - 13981684-13982529
Length = 281
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 211 GKDDYQTEADRSAQRCIVASLAAQYPNLKIIGEEDSLEDEGEVVSDWLVNEIDK 372
G DY D + CI+A L A+ P + G D E GE+V VN+I +
Sbjct: 151 GSTDYDERVDAWSLGCIMAELLARKPLFR--GSSDR-EQLGEIVDVLGVNDIKR 201
>12_02_0112 + 13783758-13784717
Length = 319
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 211 GKDDYQTEADRSAQRCIVASLAAQYPNLKIIGEEDSLEDEGEVVSDWLVNEIDK 372
G DY D + CI+A L A+ P + G D E GE+V VN+I +
Sbjct: 189 GSTDYDERVDAWSLGCIMAELLARKPLFR--GSSDR-EQLGEIVDVLGVNDIKR 239
>10_07_0078 + 12657239-12658324
Length = 361
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Frame = +1
Query: 145 ANRAGKIVRDVMSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYPNLK---IIGEE- 312
A+R G V+++ + + G+ ++ + D Q + DR + + P II E+
Sbjct: 120 AHRIGSRVKELNERMD-GLFKQAEADQQADTDRLKSSSTPGNPHSGNPRRTAPGIIHEDI 178
Query: 313 --DSLEDEGEVVSDWLVNEIDKEIL 381
D +E++ ++ DWL+N DK+ L
Sbjct: 179 VGDKIEEDKRMLVDWLINH-DKKYL 202
>02_01_0523 -
3792864-3792962,3793509-3793610,3793861-3793974,
3794060-3794158,3794725-3794779,3795266-3795433,
3795668-3795735,3796133-3796195,3796425-3796703
Length = 348
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/86 (25%), Positives = 43/86 (50%)
Frame = +1
Query: 97 GSVPLIVRLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQTEADRSAQRCIVASLA 276
G V + +LA + N ++ + ++K I KG D T+ D+ ++ I+ +
Sbjct: 95 GQVENWIEILA--ILQVNMEITVIMEAVNKPR-NIHYKGVADLVTDTDKLSESVILEVVR 151
Query: 277 AQYPNLKIIGEEDSLEDEGEVVSDWL 354
+P+ I+GEE L G+ +S++L
Sbjct: 152 KTFPDHLILGEEGGL--IGDALSEYL 175
>01_03_0151 -
13229861-13230347,13230442-13230540,13230701-13230918,
13231210-13231317,13231366-13231518,13232962-13233015,
13233276-13233374,13234458-13234551,13234638-13234715,
13237696-13237766,13238321-13238416,13238505-13238582,
13238683-13238751,13238830-13238897,13239038-13239115,
13239190-13239289,13240002-13240061,13240488-13240579,
13241730-13241779,13241870-13241954,13242035-13242134,
13242933-13243013,13244827-13244907
Length = 832
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 526 VSHSQLYQLVQSHVLRILEYILKFH 452
V + Y ++QS VL +LEYI K H
Sbjct: 500 VENGDRYNMLQSGVLELLEYIRKVH 524
>01_06_1739 - 39573754-39574194,39574485-39574664
Length = 206
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 97 GSVPLIVRLLASSVSVANRAGKIVRDVMSKG 189
GSVP V L+ SSVSV + + R+ +KG
Sbjct: 126 GSVPRRVHLVVSSVSVTRQDAALWRNATAKG 156
>03_02_0583 + 9635002-9637299
Length = 765
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 409 EVKEEDIVVWVDPLDGTSEYTQGFLEHVTVLIGIAVNETPVAGVIHQPYYKNI 567
++ + I++++D + T F+ V VL GIA + + V IHQP Y+ I
Sbjct: 269 DIIHDPIILFLDEPTSGLDSTSAFMV-VKVLQGIAKSGSVVIMSIHQPSYRII 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,334,595
Number of Sequences: 37544
Number of extensions: 245171
Number of successful extensions: 654
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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