Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30m19
         (687 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   3.0  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   9.0  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         23   9.0  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 477 NDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDA 602
           ND+  K   +TQ L+    +LA A+++L   A + I+  RD+
Sbjct: 470 NDIWKKETAVTQTLSGYKEELARADQALRSMAGKPILNGRDS 511


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 586 WLDATLKRLGKIAKNARR 639
           W D TLKRL ++ + A R
Sbjct: 406 WADRTLKRLKRVKRAAYR 423


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 481 SFVSISTAGAYLPVHST*GMTSSKSHSCNSMA*GNL 374
           S   + TA A +PV S   ++++ S SC+S A G+L
Sbjct: 223 SLSPVHTAPA-IPVSSCSPLSTASSASCSSSAAGSL 257


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,117
Number of Sequences: 2352
Number of extensions: 16700
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)