Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30m15
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0209 - 23282848-23284110 33 0.22
01_06_1309 - 36170947-36171077,36171227-36172198,36172285-361724... 31 1.2
10_02_0202 - 6770448-6770561,6771185-6771279,6771638-6771686,677... 29 2.8
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 29 2.8
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078... 29 3.6
03_01_0294 + 2260548-2260959,2261098-2261432,2261493-2261531 29 3.6
05_05_0100 + 22388457-22388561,22388657-22388808,22388897-223892... 29 4.8
05_05_0099 - 22381586-22382604,22382683-22383056,22383145-223832... 29 4.8
03_04_0038 - 16718024-16718368,16718455-16719339 29 4.8
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116... 28 8.4
>05_05_0209 - 23282848-23284110
Length = 420
Score = 33.1 bits (72), Expect = 0.22
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +3
Query: 33 FPYAALSYINVTLCTYTAMLVGY--MATFNEFEYLQYWFLLSFL---MSVALNAPTL-WT 194
FP A + V AML MAT E+LQ+WF+LS L ++VALN + WT
Sbjct: 235 FPSARARAVAVAGHLNRAMLAALVSMATILAVEFLQWWFMLSLLPEAIAVALNVAIMAWT 294
>01_06_1309 -
36170947-36171077,36171227-36172198,36172285-36172413,
36172535-36172779,36172904-36173055,36173202-36173306
Length = 577
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 603 YASNLQSIPVVPFSYNDPPPPFSNI 677
YASN ++P+ PF+Y PP +N+
Sbjct: 424 YASNFPAMPLSPFNYTGTPPNNTNV 448
>10_02_0202 -
6770448-6770561,6771185-6771279,6771638-6771686,
6771795-6771843,6772035-6772228
Length = 166
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 69 LCTYTAMLVGYMATFNEFEYLQYWFLLSFLMSVALNAPTLWTA 197
L + A+++G + YW LL L +V LN +WTA
Sbjct: 50 LNAFGAIVLGAPIGIKYWAATTYWSLLMSLFTVVLNVSAIWTA 92
>04_03_0927 +
20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 290 KHHIIQQHVTKVHGLEQLHFVNYFMGFCGFERR 192
K + I QH+ ++H +L F+N F+ F G+ R
Sbjct: 735 KSYDISQHLHEIHESVRLAFLNSFLDFAGYLER 767
>08_02_1332 +
26207164-26207257,26207454-26207530,26207771-26207841,
26208448-26208502,26209066-26209187,26209272-26209353,
26210070-26210160,26210759-26210982,26211294-26211413,
26211523-26211705
Length = 372
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 149 QQKPVL*IFKFVECCHVSH 93
+QKPVL + F+ CCH SH
Sbjct: 97 RQKPVL--YTFINCCHTSH 113
>03_01_0294 + 2260548-2260959,2261098-2261432,2261493-2261531
Length = 261
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 618 QSIPVVPFSYNDPPPPFSNIVMDDI 692
Q +PVVPF+ +PPPP ++M DI
Sbjct: 234 QLLPVVPFNAFNPPPP---LIMKDI 255
>05_05_0100 +
22388457-22388561,22388657-22388808,22388897-22389270,
22389349-22390367
Length = 549
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 603 YASNLQSIPVVPFSYNDPPPPFSNIV 680
YASN P+ PF+Y PP +N++
Sbjct: 421 YASNFPYYPLNPFNYTGTPPNNTNVM 446
>05_05_0099 -
22381586-22382604,22382683-22383056,22383145-22383296,
22383392-22383496
Length = 549
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 603 YASNLQSIPVVPFSYNDPPPPFSNIV 680
YASN P+ PF+Y PP +N++
Sbjct: 421 YASNFPYYPLNPFNYTGTPPNNTNVM 446
>03_04_0038 - 16718024-16718368,16718455-16719339
Length = 409
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 555 IMIATVWSLKNNLTSFYASNLQSIPVVPFSYNDPPPPFSNIVMDD 689
+M ++ + +N T S+L +PVVPF+ +PPPP ++ D
Sbjct: 261 VMKERMYKIFSNATVVSYSHL--LPVVPFNAFNPPPPEFALMKSD 303
>05_06_0106 -
25611239-25611295,25611388-25611477,25611582-25611669,
25611757-25611836,25611968-25612120,25612403-25612546,
25612633-25612884,25612985-25613116,25613207-25613287,
25613368-25613488,25613930-25614025,25614195-25614298,
25614481-25614567,25614690-25614803,25614871-25614930,
25615007-25615102,25615316-25615366,25615457-25615562,
25615642-25615713,25616117-25616172,25616446-25616508,
25616636-25616764
Length = 743
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 658 GGSLYENGTTGILCKFEA*KLVKLFFKDHTVAIIMYKAHINELN 527
GGS N G+LC F + L F ++I Y++ I+E +
Sbjct: 12 GGSRLRNACGGVLCAFTLLLIGVLAFSIRLFSVIKYESVIHEFD 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,864,833
Number of Sequences: 37544
Number of extensions: 348104
Number of successful extensions: 892
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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