Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30m15
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical pr...    31   0.81 
Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine r...    29   4.3  
AC006712-4|ABD63214.1|  166|Caenorhabditis elegans Hypothetical ...    28   5.7  
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical
           protein C31A11.10 protein.
          Length = 273

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
 Frame = +3

Query: 405 YTDYRY-AKSCYMVILFVSVMSFT--IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVW 575
           Y +YR    +C++    + ++S    I+ G+ C    ++D+ L  +SF+CA+     T W
Sbjct: 115 YYNYRQNLLNCFVWFFIICIVSIDQYILFGV-C--DVVIDTPLDCDSFLCAMNQCYTTYW 171

Query: 576 SLKNNLTSFYASNLQSIPVVPF 641
            L   +T+F  SN+    VV F
Sbjct: 172 LLHERITTF--SNVFFSAVVTF 191


>Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.8 protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +3

Query: 429 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFYA 608
           SCY +I+ +  + F           KLV  S+    F   L I+ A+VW L N+L +   
Sbjct: 100 SCYAIIISLITIHFYYRYLSVMFPVKLVRFSVRNLPFWILLVILNASVWFLLNSLVN-GP 158

Query: 609 SNLQSIPVVP 638
           S +Q   ++P
Sbjct: 159 SEIQDAILIP 168


>Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical
           protein T21B10.4 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +3

Query: 60  NVTLCTYTAMLVGYMATFNEFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMK 239
           NV +      ++ +M     + Y+ YW   +F   VA+    L T F+T EA   V + +
Sbjct: 344 NVVMWLLVVCIIMFMIIMLLYVYI-YWLRSTF---VAIEERALPTEFET-EASLFVAKQR 398

Query: 240 LFQAMYFSNVLLNYVV 287
            FQ+ Y+   LL+  V
Sbjct: 399 SFQSAYYDPALLDVSV 414


>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 104 HVSHQHGRVGAQR-HVNVRQRSIGKLHFCVGR 12
           HVSH HGR+G  R H   R  + G+ H  + R
Sbjct: 14  HVSHGHGRIGKHRKHPGGRGNAGGQHHHRINR 45


>AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 57 protein.
          Length = 280

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = +3

Query: 405 YTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLK 584
           Y  +R   S Y+V+ F+S+  F     L      ++D  +   +F C +       W + 
Sbjct: 116 YHKHRNKISMYLVLFFISLFVFFDQFMLFGYCGNVIDVPVNCENFQCTVNQCYLQYWMVH 175

Query: 585 NNLTSFYASNLQSI 626
             +  F  S+L +I
Sbjct: 176 EQVVFFVISSLSTI 189


>AC006712-4|ABD63214.1|  166|Caenorhabditis elegans Hypothetical
           protein Y119C1B.12 protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +3

Query: 6   RLSTDTKVKFPYAALSYINVTLCTYTAMLVGYMATF------NEFEYLQYW 140
           R+ T+T + +    L+   V L  + A+++GY+  F      N+ + L YW
Sbjct: 88  RIRTETDINYTVFNLALTIVRLAMFVAIIIGYVFVFSAYSKNNQCDQLLYW 138


>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
            R07G3.3a protein.
          Length = 1982

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 595  VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 485
            +KL F D T  I  YK  I  LN+K+L    + K  K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397


>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
            R07G3.3b protein.
          Length = 1987

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 595  VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 485
            +KL F D T  I  YK  I  LN+K+L    + K  K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,105,647
Number of Sequences: 27780
Number of extensions: 333449
Number of successful extensions: 925
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)