Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30m10
         (258 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0N3Z7 Cluster: BRO-B; n=13; Nucleopolyhedrovirus|Rep: ...    53   1e-06
UniRef50_Q8QLL0 Cluster: BRO-b; n=2; Nucleopolyhedrovirus|Rep: B...    52   3e-06
UniRef50_Q4KT25 Cluster: BRO-A; n=3; root|Rep: BRO-A - Chrysodei...    52   3e-06
UniRef50_Q99GY7 Cluster: Bro; n=27; root|Rep: Bro - Helicoverpa ...    49   2e-05
UniRef50_Q287M2 Cluster: BRO-A; n=1; Agrotis segetum nucleopolyh...    43   0.002
UniRef50_A3IDS9 Cluster: Putative methylmalonyl-CoA mutase small...    32   2.9  
UniRef50_Q23Q62 Cluster: Zinc finger in N-recognin family protei...    31   3.8  
UniRef50_Q1Q681 Cluster: Putative uncharacterized protein; n=1; ...    30   8.9  

>UniRef50_Q0N3Z7 Cluster: BRO-B; n=13; Nucleopolyhedrovirus|Rep:
           BRO-B - Clanis bilineata nucleopolyhedrosis virus
          Length = 339

 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 23/38 (60%), Positives = 32/38 (84%)
 Frame = +2

Query: 2   KFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARMNS 115
           KFKAKHN+ITLL++ TRE+L+  + ++MT+RQIAR  S
Sbjct: 292 KFKAKHNKITLLDNLTREQLVEAVQASMTERQIARQFS 329


>UniRef50_Q8QLL0 Cluster: BRO-b; n=2; Nucleopolyhedrovirus|Rep:
           BRO-b - Mamestra configurata NPV-A
          Length = 372

 Score = 52.0 bits (119), Expect = 3e-06
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = +2

Query: 2   KFKAKHNRITLLEDYTREELMNVIGSTMTDRQIA 103
           KF A+HN+ITLL D T+EEL++VI STMT RQ+A
Sbjct: 333 KFTARHNKITLLNDMTKEELVDVISSTMTTRQLA 366


>UniRef50_Q4KT25 Cluster: BRO-A; n=3; root|Rep: BRO-A - Chrysodeixis
           chalcites nucleopolyhedrovirus
          Length = 517

 Score = 52.0 bits (119), Expect = 3e-06
 Identities = 22/34 (64%), Positives = 29/34 (85%)
 Frame = +2

Query: 2   KFKAKHNRITLLEDYTREELMNVIGSTMTDRQIA 103
           KF A+HN+ITLLED TRE+L+  I S+MT+RQ+A
Sbjct: 474 KFTARHNKITLLEDLTREDLVEAINSSMTERQVA 507


>UniRef50_Q99GY7 Cluster: Bro; n=27; root|Rep: Bro - Helicoverpa
           armigera nucleopolyhedrovirus G4
          Length = 527

 Score = 48.8 bits (111), Expect = 2e-05
 Identities = 21/34 (61%), Positives = 28/34 (82%)
 Frame = +2

Query: 2   KFKAKHNRITLLEDYTREELMNVIGSTMTDRQIA 103
           K+KA+HNRITL ED TRE+L+  I ST++ RQ+A
Sbjct: 474 KYKARHNRITLHEDLTREDLLQAIESTVSSRQVA 507


>UniRef50_Q287M2 Cluster: BRO-A; n=1; Agrotis segetum
           nucleopolyhedrovirus|Rep: BRO-A - Agrotis segetum
           nuclear polyhedrosis virus (AsNPV)
          Length = 324

 Score = 42.7 bits (96), Expect = 0.002
 Identities = 16/34 (47%), Positives = 29/34 (85%)
 Frame = +2

Query: 2   KFKAKHNRITLLEDYTREELMNVIGSTMTDRQIA 103
           KFKAK+N+ITLL++Y +++L+ +I  ++T RQ++
Sbjct: 283 KFKAKNNKITLLKEYDKQKLIEIINKSLTARQLS 316


>UniRef50_A3IDS9 Cluster: Putative methylmalonyl-CoA mutase small
           subunit; n=1; Bacillus sp. B14905|Rep: Putative
           methylmalonyl-CoA mutase small subunit - Bacillus sp.
           B14905
          Length = 563

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 5   FKAKHNRITLLEDYTREELMNVIGSTMTDRQIARMNSLRNAQ 130
           F   +  +TL   YT+E L+  +G  + DRQ+A + SL+N+Q
Sbjct: 31  FTKTNEGVTLQPMYTQESLVAKLGDEL-DRQVATIRSLQNSQ 71


>UniRef50_Q23Q62 Cluster: Zinc finger in N-recognin family protein;
            n=7; Tetrahymena thermophila SB210|Rep: Zinc finger in
            N-recognin family protein - Tetrahymena thermophila SB210
          Length = 2233

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -1

Query: 246  ITKCFIYYALLKNSIYYALRKHFAGH--PMLKRLTTYKNFYCALRKLFMRAICRS 88
            ITK  I Y   K  I+Y   ++   H   M K   TYKNF   L K+     C+S
Sbjct: 1857 ITKIIISYFFAKEIIFYQQTEYSVDHYYQMKKVNNTYKNFILQLIKICFCTNCQS 1911


>UniRef50_Q1Q681 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Kuenenia stuttgartiensis|Rep: Putative
           uncharacterized protein - Candidatus Kuenenia
           stuttgartiensis
          Length = 196

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 5   FKAKHNRITLLEDYTREELMNVIGSTMTDRQ-IARMNSLRNAQ 130
           FK+K + + LL D   E LM+ + + MTD   I  +N++  AQ
Sbjct: 50  FKSKRDILRLLIDNVEEALMDTVDNAMTDENPIQNLNNILLAQ 92


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,711,438
Number of Sequences: 1657284
Number of extensions: 3941757
Number of successful extensions: 9200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9196
length of database: 575,637,011
effective HSP length: 63
effective length of database: 471,228,119
effective search space used: 10367018618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)