Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30m10
         (258 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    24   2.9  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    24   2.9  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    24   3.8  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    24   3.8  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    24   3.8  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    23   8.9  

>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -2

Query: 197  MHYESTLLV--TQCLNA*RHIKIFIARCANCSC 105
            ++YE  L+   + C N  R + ++  RC N SC
Sbjct: 1308 LYYEGILVCDDSSCGNRTRQMSVYGKRCCNKSC 1340


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 253 FLNYKMFYLLCIIKKQYILCI 191
           F N+K F+L C     Y +C+
Sbjct: 136 FRNHKFFFLECFYLNLYSICV 156


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 234 FIYYALLKNSIYYALRKHFAGHPM-LKRLT 148
           F  Y L KN++ ++  KHF   P+  +R T
Sbjct: 575 FKSYVLFKNNLVFSETKHFGTTPVSFRRFT 604


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 246 ITKCFIYYALLKNSIYYALRKHFAGHPMLKRL 151
           +T C ++ A+L N+IY A  + FA  P+ + L
Sbjct: 66  VTSCDLHAAILGNNIYRA--RKFAIFPITRTL 95


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 213 KNSIYYALRKHFAGHPM 163
           +NS+Y A+R+ ++ H M
Sbjct: 305 RNSVYQAIRRSYSAHDM 321


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/45 (20%), Positives = 21/45 (46%)
 Frame = -1

Query: 213 KNSIYYALRKHFAGHPMLKRLTTYKNFYCALRKLFMRAICRSVIV 79
           ++ ++Y    +    P+L+ LT + N      +L   A+C   ++
Sbjct: 512 ESEVFYYFENYDEDIPILRNLTEFYNIAIPWLRLSGLALCHDPVI 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,040,952
Number of Sequences: 5004
Number of extensions: 17323
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)