Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30m10
         (258 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0897 - 28605324-28605928,28606725-28606899                       27   2.1  
03_05_1133 - 30614901-30615389,30615823-30615933,30616113-306161...    27   2.7  
01_03_0140 - 12979580-12980158,12980297-12980479,12980721-129809...    26   3.6  
11_08_0005 + 27536091-27536761,27539697-27539890,27540097-275402...    25   6.3  
10_01_0021 - 281130-281224,281758-281842,281916-281971,282408-28...    25   8.4  
04_04_0244 - 23869222-23870322,23871456-23871521                       25   8.4  

>03_05_0897 - 28605324-28605928,28606725-28606899
          Length = 259

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 180 FAGHPMLKRLTTYKNFYCALRKLFMRAICRSVIV 79
           FAG   LK+LT +K  + +  +  M++ CR+ ++
Sbjct: 223 FAGFANLKKLTLHKVLFLSDSQCLMQSCCRNALL 256


>03_05_1133 -
           30614901-30615389,30615823-30615933,30616113-30616178,
           30616347-30616406,30616493-30616801,30616960-30617108,
           30617200-30617269,30617370-30617494,30617516-30617573,
           30618176-30618370,30618585-30618857,30618950-30619120,
           30619203-30619333,30619423-30619582,30619712-30619900,
           30620023-30620118,30620381-30620611,30620715-30620853,
           30620903-30621057,30621160-30621378
          Length = 1131

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 61  NERDRLHYDRPTNCAHEQFAQRAIKIFICRQAFKHWVTSKVLS*CII 201
           + RDR  YD+  N A      R   I IC   F  W  S++    I+
Sbjct: 104 DRRDRRDYDQIANLAKRMGLYRCRNIEICGLVFSLWNGSEMYGKVIV 150


>01_03_0140 -
           12979580-12980158,12980297-12980479,12980721-12980914,
           12980974-12980998
          Length = 326

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 216 LKNSIYYALRKHFAGHPMLK 157
           L  S++ +LR+ FAGHP+++
Sbjct: 229 LSFSLFKSLRRRFAGHPLVE 248


>11_08_0005 +
           27536091-27536761,27539697-27539890,27540097-27540255,
           27540385-27541493
          Length = 710

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -1

Query: 231 IYYALLKNSIYYALRKHFAGHPMLKRLTTYKNFYCALRKLFMRAICRSVI 82
           +Y    KN +     K+  G   L ++T  K+  C  +K+F  A C S +
Sbjct: 406 VYMGTHKNQLVAV--KYSKGKRKLAQMTHGKDIKCMNKKMFQNAFCWSKV 453


>10_01_0021 -
           281130-281224,281758-281842,281916-281971,282408-282584,
           282686-282805,283004-283096,283548-283668,283772-283804,
           284001-284082,286600-286739
          Length = 333

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 17  HNRITLLEDYTREELMNVIGSTMTDRQIARM 109
           HNR ++L++     L N  G   T RQ+  M
Sbjct: 107 HNRQSMLQEVADLNLSNAYGEVCTPRQLVIM 137


>04_04_0244 - 23869222-23870322,23871456-23871521
          Length = 388

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 174 GHPMLKRLTTYKNFYCALRKLFMRAICRSVIVEPITFI 61
           G P  K + T     CALR    RA+   +I  PI  +
Sbjct: 21  GEPASKAVLTMSRLRCALRGFDFRALLALLIGVPILIL 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,354,423
Number of Sequences: 37544
Number of extensions: 105173
Number of successful extensions: 224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)