Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30m10
         (258 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   0.46 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   0.80 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   3.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    20   4.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   5.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   7.4  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 0.46
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 238 MFYLLCIIKKQYILCITKALCWSPNA*TLDDI 143
           + + LCI+    + C    LC       LDDI
Sbjct: 7   LLFTLCIVSYMMVRCDDITLCLKQENLNLDDI 38


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 0.80
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 4   VQSQAQPHHVAGRLHARGANERDRLHYD 87
           ++ Q +     G LH+  +   DRLHY+
Sbjct: 689 IREQTESDDKEGYLHSVVSGALDRLHYE 716


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 146 HIKIFIARCANCSCA 102
           H  ++  RCANC+ A
Sbjct: 39  HSNVYQYRCANCTYA 53


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 82   YDRPTNCAHEQ 114
            YD P NCA E+
Sbjct: 1807 YDDPANCAPEE 1817


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 3.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 67  RDRLHYDRPTNCAHEQFAQRAIKI 138
           R +L YD  T+     ++ RAI I
Sbjct: 289 RSQLEYDLQTSIMSRHYSTRAIVI 312


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 207 SIYYALRKHF 178
           S YY+L++HF
Sbjct: 16  SCYYSLKRHF 25


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 229 LLCIIKKQYILCITKALCWSP 167
           LLC+     I+  T  LC SP
Sbjct: 432 LLCVFFLTTIVSTTVILCGSP 452


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 121 QRAIKIFICRQAFKH 165
           +R  K  +C +AF+H
Sbjct: 145 ERPYKCDVCERAFEH 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,528
Number of Sequences: 438
Number of extensions: 1025
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)