Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30m03
(622 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain tran... 22 3.6
AF230313-1|AAF64147.1| 210|Tribolium castaneum labial protein p... 22 3.6
AF230312-1|AAF64146.1| 253|Tribolium castaneum labial protein p... 22 3.6
DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein. 21 6.3
AM712903-1|CAN84642.1| 148|Tribolium castaneum hypothetical pro... 21 6.3
AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax pr... 21 8.3
AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax pr... 21 8.3
AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax pr... 21 8.3
AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax pr... 21 8.3
AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax pr... 21 8.3
AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein. 21 8.3
AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduce... 21 8.3
>AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain
transcription factor Labialprotein.
Length = 353
Score = 22.2 bits (45), Expect = 3.6
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -3
Query: 446 ADFHDAVP-GYSGAHASPPSTETV 378
+++H P GY+G+ +PPS + V
Sbjct: 40 SNYHYEDPYGYTGSEETPPSPQEV 63
>AF230313-1|AAF64147.1| 210|Tribolium castaneum labial protein
protein.
Length = 210
Score = 22.2 bits (45), Expect = 3.6
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -3
Query: 446 ADFHDAVP-GYSGAHASPPSTETV 378
+++H P GY+G+ +PPS + V
Sbjct: 40 SNYHYEDPYGYTGSEETPPSPQEV 63
>AF230312-1|AAF64146.1| 253|Tribolium castaneum labial protein
protein.
Length = 253
Score = 22.2 bits (45), Expect = 3.6
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -3
Query: 446 ADFHDAVP-GYSGAHASPPSTETV 378
+++H P GY+G+ +PPS + V
Sbjct: 40 SNYHYEDPYGYTGSEETPPSPQEV 63
>DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein.
Length = 414
Score = 21.4 bits (43), Expect = 6.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 588 TSATTPCVCEQIRQKAPPLSK 526
TSA TP V ++ PPL++
Sbjct: 280 TSAATPLVRSYAPERYPPLAQ 300
>AM712903-1|CAN84642.1| 148|Tribolium castaneum hypothetical
protein protein.
Length = 148
Score = 21.4 bits (43), Expect = 6.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2
Query: 513 LQCSNNPVRHA 481
+QCSN+P+R A
Sbjct: 60 IQCSNSPLRKA 70
>AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 133 AVMTASMRMIAPVFSTSTSRHFSKA 59
A TAS + +P STS++ KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182
>AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax
protein.
Length = 230
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 133 AVMTASMRMIAPVFSTSTSRHFSKA 59
A TAS + +P STS++ KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182
>AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 133 AVMTASMRMIAPVFSTSTSRHFSKA 59
A TAS + +P STS++ KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182
>AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax
protein.
Length = 297
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 133 AVMTASMRMIAPVFSTSTSRHFSKA 59
A TAS + +P STS++ KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182
>AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax
protein.
Length = 268
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 133 AVMTASMRMIAPVFSTSTSRHFSKA 59
A TAS + +P STS++ KA
Sbjct: 114 ATSTASQNLSSPASSTSSTSSTEKA 138
>AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein.
Length = 312
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 133 AVMTASMRMIAPVFSTSTSRHFSKA 59
A TAS + +P STS++ KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182
>AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduced
Scr protein.
Length = 312
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 133 AVMTASMRMIAPVFSTSTSRHFSKA 59
A TAS + +P STS++ KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,224
Number of Sequences: 336
Number of extensions: 3310
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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