Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30m03
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   3.8  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   5.1  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    26   5.1  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   6.7  
SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.7  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   8.8  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   8.8  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   8.8  

>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = +1

Query: 241  WNRCLEHNYTREI--VRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATVSVEGGDACAP 414
            WN  +   Y+  I  +R +    +P N   L           FL P+ T +V GG+    
Sbjct: 1016 WNAPIAITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSETAAVVGGNVLTS 1075

Query: 415  EYPGTAS*KSAGVCSSAGQQMDGVT 489
            +       K+  +C+++   M+ +T
Sbjct: 1076 QRITDVILKAFSICAASQGCMNNLT 1100


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 159 CNYHRRDRAVCRKSMTPTPQDVSWHSSVEPLFRT*LYS*DREINDHFTGTV*SQY 323
           C  +    A  +   + +P ++S HS+ +PL  T + S   +  D F+G+  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 132 ARILDLGVCCNYHRRDRAVCRKSMTPTPQDVS 227
           A +L+  +C NYH+R  AV    + P   D +
Sbjct: 214 AGLLEEDLCANYHKRLEAVSLDFLPPAYNDTA 245


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = -3

Query: 191 THSTIATMIIATNS*IKNSSGHDSVDENDRACIFYIDVPSLFKS 60
           +HS+ +++ I  +S + N++ H SV ++ ++  F + VPS  +S
Sbjct: 474 SHSSASSLPITPSSYLSNTTLHSSV-QSSQSSQFTVSVPSSTQS 516


>SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 467 PALLHTPADFHDAVPGYSGAHASPPSTETVAA 372
           PA+     +F   VP  +GA   PPS E++ A
Sbjct: 129 PAIFDENGEFVGDVPSVAGAIERPPSYESLPA 160


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 301 PVPSNRNTLSHSCTERHA 354
           P+PSN  TL  S  +RHA
Sbjct: 385 PIPSNVETLRSSLPQRHA 402


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 569 ASVNKSDRRRLHCQSLDSTCNAPIILFVTPSI 474
           A + K D+  ++ ++LD  C A + L   PSI
Sbjct: 629 AGLPKHDKSYVYLETLDHLCTAMVDLLSDPSI 660


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 404 ASPPSTETVAAGGKNN 357
           A  PST+++AAGG NN
Sbjct: 70  AFSPSTKSIAAGGLNN 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,123
Number of Sequences: 5004
Number of extensions: 51775
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)