Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30m03
         (622 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF097364-1|AAC71035.1|  530|Drosophila melanogaster Drongo protein.    31   1.3  
AY113261-1|AAM29266.1|  199|Drosophila melanogaster AT15479p pro...    29   3.8  
AE014297-232|AAN13279.1|  199|Drosophila melanogaster CG31542-PA...    29   3.8  
AE014297-4738|AAF57146.2|  214|Drosophila melanogaster CG15566-P...    29   6.7  

>AF097364-1|AAC71035.1|  530|Drosophila melanogaster Drongo protein.
          Length = 530

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = -3

Query: 587 RQRQRPASVNKSDRRRLHCQSLDSTCNAPIILFVTPSIC*PALLHTPADFHDAVPGYSGA 408
           +Q QR   ++K +R+R + +      +    + +  S   PA  HT    H+   GY+  
Sbjct: 106 QQEQRELMMDKYERKRYYLEPASPLKSLANAVNLKSSA--PATNHTQNGHHN---GYASI 160

Query: 407 HASPPSTETVAAGGKNNCA 351
           H +PP+ +  +A G    A
Sbjct: 161 HLTPPAAQRTSANGLQKVA 179


>AY113261-1|AAM29266.1|  199|Drosophila melanogaster AT15479p
           protein.
          Length = 199

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 579 TTPCVCEQIRQKAPPLSKFR*HLQCSNNP 493
           T  C C Q R + PP S    H+ CS  P
Sbjct: 81  TVECTCTQNRSRPPPPSVQADHITCSRGP 109


>AE014297-232|AAN13279.1|  199|Drosophila melanogaster CG31542-PA
           protein.
          Length = 199

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 579 TTPCVCEQIRQKAPPLSKFR*HLQCSNNP 493
           T  C C Q R + PP S    H+ CS  P
Sbjct: 81  TVECTCTQNRSRPPPPSVQADHITCSRGP 109


>AE014297-4738|AAF57146.2|  214|Drosophila melanogaster CG15566-PA
           protein.
          Length = 214

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +1

Query: 301 PVPSNRNTLSHSCTERHAQLFLPPAAT-----VSVEGGDACAPEYPGTAS*KSA 447
           P PS+ NT SHS ++ +A    PP  T      ++  G A A    GTA+  +A
Sbjct: 135 PNPSSHNTNSHSSSQANANANPPPNTTNNITAATLVAGAAAAAAATGTAATSTA 188


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,187,210
Number of Sequences: 53049
Number of extensions: 646035
Number of successful extensions: 2118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2118
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)